Gene detail information of Glyur004427s00043200.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32060.10phosphoribulokinase
NRXP_003516852.10PREDICTED: phosphoribulokinase, chloroplastic-like [Glycine max]
COGYP_723190.17.00E-173phosphoribulokinase [Trichodesmium erythraeum IMS101]
Swissprottr|P26302|KPPR_WHEAT0Phosphoribulokinase, chloroplastic (Precursor)
trEMBLtr|I1J4L6|I1J4L6_SOYBN0Phosphoribulokinase {ECO:0000256|RuleBase:RU004082}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0442748088797-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00855PRK, prkB EC:2.7.1.19 Carbon metabolism map01200
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0008152  metabolic process


molecular_function

GO:0005524  ATP binding

GO:0008974  phosphoribulokinase activity

GO:0016301  kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004427s00043200.1PF00485.13PRK692673.00E-78


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.046
SRR1783600control0.032
SRR1783602moderate drought stress0.117
SRR1811619moderate drought stress0.117

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.334
DRR006520Root Summer glycyrrhizin high producing strain0.331
DRR006521Root Winter glycyrrhizin high producing strain12.613
DRR006522Root Winter glycyrrhizin high producing strain12.145
DRR006523Root Summer glycyrrhizin low producing strain0.707
DRR006524Root Summer glycyrrhizin low producing strain0.681
DRR006525Leaf Summer glycyrrhizin high producing strain1097.689
DRR006526Leaf Summer glycyrrhizin high producing strain1091.743

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.280
SRR2868004Drought Stress(Tissue:root)10.783
SRR2967015Control (Tissue:root)1.394

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave772.636
SRR9715740Leave1079.210
SRR9715741Leave690.072
SRR9715739Root0.076
SRR9715742Root0.680
SRR9715743Root1.023

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.421
SRR8749028MeJA induced 9h178.349
SRR8749029MeJA induced 9h241.223
SRR8749030Uninduced11.191
SRR8749031Uninduced57.273
SRR8749032Uninduced102.569

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.813
SRR8400027Control-Root1.391

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved