Gene detail information of Glyur004429s00047548.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71697.12.00E-36choline kinase 1
NRXP_004489916.12.02E-60PREDICTED: choline/ethanolamine kinase-like [Cicer arietinum]
Swissprottr|Q9M9H6|CK1_ARATH5.00E-43Probable choline kinase 1
trEMBLtr|B7FI98|B7FI98_MEDTR1.00E-60Uncharacterized protein {ECO:0000313|EMBL:AFK42951.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold044291451914884+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14156CHK EC:2.7.1.32 2.7.1.82 Glycerophospholipid metabolism map00564
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0046474  glycerophospholipid biosynthetic process


molecular_function

GO:0016301  kinase activity

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004429s00047548.1PF01633.15Choline_kinase701215.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.197
SRR1783600control1.066
SRR1783602moderate drought stress1.094
SRR1811619moderate drought stress0.924

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.445
DRR006520Root Summer glycyrrhizin high producing strain0.147
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.952
DRR006524Root Summer glycyrrhizin low producing strain0.675
DRR006525Leaf Summer glycyrrhizin high producing strain6.356
DRR006526Leaf Summer glycyrrhizin high producing strain6.662

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.047
SRR2868004Drought Stress(Tissue:root)13.567
SRR2967015Control (Tissue:root)11.293

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.392
SRR9715740Leave3.006
SRR9715741Leave10.007
SRR9715739Root0.743
SRR9715742Root1.970
SRR9715743Root0.576

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.045
SRR8749028MeJA induced 9h1.842
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.622
SRR8749031Uninduced0.760
SRR8749032Uninduced0.117

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.898
SRR8400027Control-Root6.240

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved