Gene detail information of Glyur004440s00042557.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27360.1 | 5.00E-23 | GDSL-like Lipase/Acylhydrolase superfamily protein |
| NR | KHN08454.1 | 1.61E-70 | GDSL esterase/lipase [Glycine soja] |
| Swissprot | tr|Q9ZQI3|GDL40_ARATH | 3.00E-25 | GDSL esterase/lipase At2g27360 (Precursor) |
| trEMBL | tr|G7IKA6|G7IKA6_MEDTR | 2.00E-67 | GDSL-like lipase/acylhydrolase {ECO:0000313|EMBL:AES63988.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04440 | 394 | 9924 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K21026 | AAE | EC:3.1.1.80 | Indole alkaloid biosynthesis | map00901 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.660 |
| SRR1783600 | control | 0.666 |
| SRR1783602 | moderate drought stress | 0.855 |
| SRR1811619 | moderate drought stress | 0.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.886 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.131 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.050 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.484 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.418 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.831 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.058 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.221 |
| SRR2967015 | Control (Tissue:root) | 0.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.012 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.026 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.046 |
| SRR8749028 | MeJA induced 9h | 0.261 |
| SRR8749029 | MeJA induced 9h | 0.153 |
| SRR8749030 | Uninduced | 0.075 |
| SRR8749031 | Uninduced | 0.141 |
| SRR8749032 | Uninduced | 0.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.010 |
| SRR8400027 | Control-Root | 0.000 |