Gene detail

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Gene detail information of Glyur004468s00046957.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61040.1	6.00E-112	cytochrome P450, family 76, subfamily C, polypeptide 7
NR	XP_003610827.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_004643624.1	3.00E-34	cytochrome P450 hydroxylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	2.00E-175	Geraniol 8-hydroxylase
trEMBL	tr\|G7K566\|G7K566_MEDTR	0	Cytochrome P450 family 71 protein {ECO:0000313\|EMBL:AES93785.1}

Sequence

Transcript Sequence

>Glyur004468s00046957.1
ACCAACAGAAACAAGTTTCCCTCTTTCCATCAATTCTTATTTGTATCGTTGCAACAACAACANCCAGATATGGAAACAGTGAGTTGTGTGCTCGTCCTCGTGCTCACATGCACCTTCATTCATTCACTCCTTGCGAGAATAAGAAGAAACAAATCAGCAAACCACAAGCTTCCACTTCCACCAGGCCCTTCCTCTCTTCCTATTTTCGGAAACCTCCTCGAACTGGGCAAAAAGCCACACCAATCCCTGGCCCACCTTGCCAAAATTCACGGCCCAGTAATNCGCTTAAAGCTGGGCCAAGTAACAACCATAATAATCTCTTCAGCTGACATGGCCAAAGAGGTTCTCCAAACCCATGACCTGTTGTTCTCGGACCGAACCGTACCGCATGCTGTTACGGTTCACAACCACGACCAGTATAGCCTGGCCTTTATCCCCGTTTCACCCCTCTGGCGAGACATGAGAAAAATATGCAACAACAATTTGTTCTCCAACAAGACACTGGATGCGAGCCAATACCTCAGGCGCACAAAAATGCAGGAACTCCTCAATGACGTCAATCAGAGCAGTGTGAGCGGTGAAGCAGTGGATATTGGGAGAGCAGCTTTCAAGACCTCCATCAACTTTCTGTCAAACACTATCTTCTCCTTGGATTTCGTGAACTCAACGANTGACACAGGGGAGTACAAGGATATCGTGGTGAACATCTTGAAAGCCGTTGGAACACCCAACATGTCCGATTTTTTCCCAGTGCTAAAGATGGTGGACCCACAAGGCATCAAAAGGCGTTGTGCCTTNTACGTTGGCAAGTTGTTCCATGTCTTTGCCGACTTAATTGATCAGAGGCAACAAAGGAAAGGATTTGATCTACTTGTTGCTGGAACTGATACAACTTCATACACATTGGAATGGGCAATGGCTGAGCTGCTTCACAACCCAAATACTCTTTCAAAAGCAAGAAAAGAACTTGAAGAGACCGTTGGAATGGGTAAACCAATTGAAGAATCAGACATTGCAAGGCTCCCTTACTTACAAGCGGTAATAAAGGAGACATTACGGTTACACCCGCCGGCCCCATTTCTACTCCCTCGGAAAGCCAAGGCAGATGTGGAACTGAATGGGTACACCATTCCCAAGGGTGCACAGGTGCTTATTAATGAGTGGGCCATATGCAGGGACCCAAAAGTGTGGGACAATCCCAACCTATTTTCACCTGAGAGGTTTTTAGATCAGTCCAAAAAACTTGATATTAAGGGGCAATGTTTTCAGCTCACACCGTTTGGTAGCGGGCGGAGGATATGTCCTGGTATGCCGTTGGCTATCAGGATGTTACACTTGATGTTGGGATCGTTGGTGAATTCTTTTGACTGGAAGCTTGAAAATGGAATGAAACCGGAAGACATGGACATGGAGGATGCAGTGCAGGGAAATGCCTTGAGAAAAAGTGATCCATTGCGAGTTATTCCACTCAAATTAACCAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04468	5105	7832	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004468s00046957.1	PF00067.17	p450	60	284	1.90E-27
Glyur004468s00046957.1	PF00067.17	p450	288	472	1.90E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.178
SRR1783600	control	0.181
SRR1783602	moderate drought stress	0.188
SRR1811619	moderate drought stress	0.153

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.110
SRR2868004	Drought Stress(Tissue:root)	60.634
SRR2967015	Control (Tissue:root)	23.457

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.247
SRR9715743	Root	0.043

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.960
SRR8749028	MeJA induced 9h	4.947
SRR8749029	MeJA induced 9h	3.066
SRR8749030	Uninduced	25.275
SRR8749031	Uninduced	44.426
SRR8749032	Uninduced	10.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	10.810
SRR8400027	Control-Root	6.939