Gene detail information of Glyur004504s00043151.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003617371.1 | 8.89E-119 | F-box protein interaction domain containing protein [Medicago truncatula] |
| trEMBL | tr|G7K3A5|G7K3A5_MEDTR | 3.00E-119 | Uncharacterized protein {ECO:0000313|EMBL:AET00330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04504 | 3294 | 13353 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.599 |
| SRR1783600 | control | 0.593 |
| SRR1783602 | moderate drought stress | 1.124 |
| SRR1811619 | moderate drought stress | 1.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.267 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.142 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.962 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.913 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.006 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.546 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.076 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.566 |
| SRR2967015 | Control (Tissue:root) | 2.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.441 |
| SRR9715740 | Leave | 2.234 |
| SRR9715741 | Leave | 1.303 |
| SRR9715739 | Root | 0.395 |
| SRR9715742 | Root | 1.211 |
| SRR9715743 | Root | 0.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.348 |
| SRR8749028 | MeJA induced 9h | 4.169 |
| SRR8749029 | MeJA induced 9h | 3.930 |
| SRR8749030 | Uninduced | 2.638 |
| SRR8749031 | Uninduced | 7.777 |
| SRR8749032 | Uninduced | 7.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.289 |
| SRR8400027 | Control-Root | 1.244 |