Gene detail information of Glyur004534s00041844.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02440.1 | 5.00E-71 | F-box family protein |
| NR | XP_003625923.1 | 1.08E-134 | Phytochrome A-associated F-box protein [Medicago truncatula] |
| Swissprot | tr|Q8LEA8|EID1_ARATH | 7.00E-99 | Phytochrome A-associated F-box protein |
| trEMBL | tr|G7KRX0|G7KRX0_MEDTR | 4.00E-135 | Phytochrome A-associated F-box protein, putative {ECO:0000313|EMBL:AES82141.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04534 | 7464 | 9304 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.069 |
| SRR1783600 | control | 25.022 |
| SRR1783602 | moderate drought stress | 33.428 |
| SRR1811619 | moderate drought stress | 33.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.457 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.498 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.436 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.196 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.818 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.293 |
| SRR2967015 | Control (Tissue:root) | 19.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.059 |
| SRR9715740 | Leave | 6.351 |
| SRR9715741 | Leave | 10.583 |
| SRR9715739 | Root | 21.189 |
| SRR9715742 | Root | 16.372 |
| SRR9715743 | Root | 18.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.710 |
| SRR8749028 | MeJA induced 9h | 7.364 |
| SRR8749029 | MeJA induced 9h | 5.014 |
| SRR8749030 | Uninduced | 3.449 |
| SRR8749031 | Uninduced | 2.202 |
| SRR8749032 | Uninduced | 3.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.391 |
| SRR8400027 | Control-Root | 32.952 |