Gene detail information of Glyur004568s00045019.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 7.00E-67 | chitinase A |
| NR | AAN10048.1 | 7.08E-173 | high molecular weight root vegetative storage protein precursor [Medicago sativa] |
| Swissprot | tr|P51614|CHIT3_VITVI | 8.00E-92 | Acidic endochitinase (Precursor) |
| trEMBL | tr|Q8GTL6|Q8GTL6_MEDSA | 3.00E-173 | High molecular weight root vegetative storage protein {ECO:0000313|EMBL:AAN10048.1} (Precursor; Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04568 | 5434 | 6973 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004568s00045019.1 | PF00704.23 | Glyco_hydro_18 | 30 | 248 | 4.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.418 |
| SRR1783600 | control | 2.447 |
| SRR1783602 | moderate drought stress | 3.134 |
| SRR1811619 | moderate drought stress | 4.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.054 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.517 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.461 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.392 |
| SRR2967015 | Control (Tissue:root) | 1.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.607 |
| SRR9715740 | Leave | 3.332 |
| SRR9715741 | Leave | 5.204 |
| SRR9715739 | Root | 13.481 |
| SRR9715742 | Root | 8.754 |
| SRR9715743 | Root | 8.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.411 |
| SRR8749028 | MeJA induced 9h | 1.725 |
| SRR8749029 | MeJA induced 9h | 0.554 |
| SRR8749030 | Uninduced | 3.743 |
| SRR8749031 | Uninduced | 3.362 |
| SRR8749032 | Uninduced | 1.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.767 |
| SRR8400027 | Control-Root | 17.091 |