Gene detail information of Glyur004568s00045020.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 2.00E-12 | chitinase A |
| NR | CAA88593.1 | 3.66E-30 | chitinase homologue [Sesbania rostrata] |
| Swissprot | tr|P17541|CHIA_CUCSA | 6.00E-18 | Acidic endochitinase (Precursor) |
| trEMBL | tr|Q41401|Q41401_SESRO | 1.00E-30 | Chitinase homologue {ECO:0000313|EMBL:CAA88593.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04568 | 11020 | 11325 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3011.003 |
| SRR1783600 | control | 2840.153 |
| SRR1783602 | moderate drought stress | 4180.758 |
| SRR1811619 | moderate drought stress | 4017.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 577.649 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 593.256 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.767 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 81.930 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 66.683 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.038 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.021 |
| SRR2967015 | Control (Tissue:root) | 7.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 191.390 |
| SRR9715740 | Leave | 44.881 |
| SRR9715741 | Leave | 38.925 |
| SRR9715739 | Root | 25.511 |
| SRR9715742 | Root | 3.578 |
| SRR9715743 | Root | 10.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.686 |
| SRR8749028 | MeJA induced 9h | 187.074 |
| SRR8749029 | MeJA induced 9h | 276.847 |
| SRR8749030 | Uninduced | 869.326 |
| SRR8749031 | Uninduced | 807.152 |
| SRR8749032 | Uninduced | 422.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.300 |
| SRR8400027 | Control-Root | 0.625 |