Gene detail information of Glyur004568s00045021.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.12.00E-37chitinase A
NRCAA88593.11.24E-91chitinase homologue [Sesbania rostrata]
Swissprottr|P51614|CHIT3_VITVI1.00E-53Acidic endochitinase (Precursor)
trEMBLtr|Q41401|Q41401_SESRO5.00E-92Chitinase homologue {ECO:0000313|EMBL:CAA88593.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold045681351414035+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004568s00045021.1PF00704.23Glyco_hydro_18321621.90E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1127.071
SRR1783600control1122.810
SRR1783602moderate drought stress2333.429
SRR1811619moderate drought stress2342.785

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain439.766
DRR006520Root Summer glycyrrhizin high producing strain452.002
DRR006521Root Winter glycyrrhizin high producing strain1.489
DRR006522Root Winter glycyrrhizin high producing strain1.556
DRR006523Root Summer glycyrrhizin low producing strain67.865
DRR006524Root Summer glycyrrhizin low producing strain68.337
DRR006525Leaf Summer glycyrrhizin high producing strain17.454
DRR006526Leaf Summer glycyrrhizin high producing strain14.358

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.508
SRR2868004Drought Stress(Tissue:root)3.345
SRR2967015Control (Tissue:root)3.076

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave629.794
SRR9715740Leave130.953
SRR9715741Leave160.734
SRR9715739Root134.668
SRR9715742Root102.130
SRR9715743Root109.812

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.395
SRR8749028MeJA induced 9h3.362
SRR8749029MeJA induced 9h0.543
SRR8749030Uninduced1.506
SRR8749031Uninduced2.411
SRR8749032Uninduced5.666

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root100.194
SRR8400027Control-Root10.458

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved