Gene detail information of Glyur004588s00038717.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03300.30dicer-like 2
NRKEH20231.10endoribonuclease dicer-like protein [Medicago truncatula]
COGYP_565613.15.00E-19Hef nuclease [Methanococcoides burtonii DSM 6242]
Swissprottr|Q3EBC8|DCL2_ARATH0Endoribonuclease Dicer homolog 2
trEMBLtr|A0A072TSQ0|A0A072TSQ0_MEDTR0Endoribonuclease dicer-like protein {ECO:0000313|EMBL:KEH20231.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold04588469813831-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11592DICER1, DCR1 EC:3.1.26.- MicroRNAs in cancer map05206


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016891  endoribonuclease activity, producing 5'-phosphomonoesters


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004588s00038717.1PF00270.24DEAD271711.70E-14
Glyur004588s00038717.1PF00271.26Helicase_C4515097.20E-15
Glyur004588s00038717.1PF03368.9Dicer_dimer5806552.50E-16
Glyur004588s00038717.1PF02170.17PAZ8419468.30E-06
Glyur004588s00038717.1PF00636.21Ribonuclease_3100610572.20E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.643
SRR1783600control3.623
SRR1783602moderate drought stress3.895
SRR1811619moderate drought stress3.795

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.820
DRR006520Root Summer glycyrrhizin high producing strain7.824
DRR006521Root Winter glycyrrhizin high producing strain0.312
DRR006522Root Winter glycyrrhizin high producing strain0.291
DRR006523Root Summer glycyrrhizin low producing strain6.640
DRR006524Root Summer glycyrrhizin low producing strain6.957
DRR006525Leaf Summer glycyrrhizin high producing strain3.202
DRR006526Leaf Summer glycyrrhizin high producing strain2.962

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.738
SRR2868004Drought Stress(Tissue:root)4.396
SRR2967015Control (Tissue:root)5.818

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.615
SRR9715740Leave0.620
SRR9715741Leave0.796
SRR9715739Root0.678
SRR9715742Root8.418
SRR9715743Root7.445

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.933
SRR8749028MeJA induced 9h0.962
SRR8749029MeJA induced 9h0.337
SRR8749030Uninduced0.031
SRR8749031Uninduced0.000
SRR8749032Uninduced0.018

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.405
SRR8400027Control-Root13.488

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved