Gene detail information of Glyur004594s00038190.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33340.20MOS4-associated complex 3B
NRXP_003555746.10PREDICTED: U-box domain-containing protein 72 [Glycine max]
COGNP_925834.12.00E-28hypothetical protein gll2888 [Gloeobacter violaceus PCC 7421]
Swissprottr|O22785|PR19B_ARATH0Pre-mRNA-processing factor 19 homolog 2 {ECO:0000305}
trEMBLtr|I1NEN5|I1NEN5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G21330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold04594244511026-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10599PRPF19, PRP19 EC:2.3.2.27 Spliceosome map03040
Ubiquitin mediated proteolysismap04120


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004594s00038190.1PF08606.6Prp19651329.60E-31
Glyur004594s00038190.1PF00400.27WD402572931.30E-09
Glyur004594s00038190.1PF00400.27WD403023374.20E-05
Glyur004594s00038190.1PF00400.27WD403533840.00022
Glyur004594s00038190.1PF00400.27WD403914252.90E-06
Glyur004594s00038190.1PF00400.27WD404875140.0023


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.486
SRR1783600control32.512
SRR1783602moderate drought stress59.774
SRR1811619moderate drought stress59.511

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain62.477
DRR006520Root Summer glycyrrhizin high producing strain61.732
DRR006521Root Winter glycyrrhizin high producing strain60.642
DRR006522Root Winter glycyrrhizin high producing strain59.249
DRR006523Root Summer glycyrrhizin low producing strain75.086
DRR006524Root Summer glycyrrhizin low producing strain75.471
DRR006525Leaf Summer glycyrrhizin high producing strain28.174
DRR006526Leaf Summer glycyrrhizin high producing strain27.959

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)79.398
SRR2868004Drought Stress(Tissue:root)66.954
SRR2967015Control (Tissue:root)81.172

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.878
SRR9715740Leave52.423
SRR9715741Leave51.548
SRR9715739Root91.825
SRR9715742Root79.889
SRR9715743Root84.265

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h70.997
SRR8749028MeJA induced 9h75.541
SRR8749029MeJA induced 9h42.204
SRR8749030Uninduced20.260
SRR8749031Uninduced18.370
SRR8749032Uninduced22.491

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root67.501
SRR8400027Control-Root61.452

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved