Gene detail information of Glyur004617s00043573.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47570.1 | 6.00E-33 | Leucine-rich repeat protein kinase family protein |
| NR | XP_003616606.1 | 1.73E-57 | Receptor kinase-like protein [Medicago truncatula] |
| COG | YP_003888639.1 | 1.00E-09 | serine/threonine protein kinase [Cyanothece sp. PCC 7822] |
| Swissprot | tr|C0LGP4|Y3475_ARATH | 8.00E-37 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) |
| trEMBL | tr|G7KGY2|G7KGY2_MEDTR | 6.00E-58 | LRR receptor-like kinase {ECO:0000313|EMBL:AES99564.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04617 | 8849 | 9340 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.9.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004617s00043573.1 | PF00069.20 | Pkinase | 1 | 113 | 5.60E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.074 |
| SRR1783600 | control | 0.144 |
| SRR1783602 | moderate drought stress | 0.115 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.213 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.073 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.227 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.034 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.255 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.172 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.173 |
| SRR2967015 | Control (Tissue:root) | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.390 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.586 |
| SRR9715743 | Root | 0.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.068 |
| SRR8400027 | Control-Root | 0.240 |