Gene detail information of Glyur004629s00047349.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04820.1 | 5.00E-26 | ovate family protein 13 |
| NR | XP_007027918.1 | 3.91E-59 | Ovate family protein 13, putative [Theobroma cacao] |
| Swissprot | tr|Q9FMC8|OPF13_ARATH | 1.00E-34 | Transcription repressor OFP13 |
| trEMBL | tr|A0A061ETM5|A0A061ETM5_THECC | 1.00E-59 | Ovate family protein 13, putative {ECO:0000313|EMBL:EOY08420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04629 | 776 | 1609 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | OFP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004629s00047349.1 | PF04844.8 | Ovate | 132 | 187 | 1.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.018 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.271 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.143 |
| SRR2967015 | Control (Tissue:root) | 0.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.289 |
| SRR9715740 | Leave | 0.094 |
| SRR9715741 | Leave | 0.323 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.033 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.046 |