Gene detail information of Glyur004632s00040687.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04790.12.00E-111Ribose 5-phosphate isomerase, type A protein
NRXP_007147157.12.07E-173hypothetical protein PHAVU_006G100600g [Phaseolus vulgaris]
COGYP_005372594.11.00E-62ribose-5-phosphate isomerase [Corallococcus coralloides DSM 2259]
Swissprottr|Q9S726|RPI3_ARATH1.00E-141Probable ribose-5-phosphate isomerase 3, chloroplastic (Precursor)
trEMBLtr|V7BRG8|V7BRG8_PHAVU8.00E-174Uncharacterized protein {ECO:0000313|EMBL:ESW19151.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0463228853757+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01807rpiA EC:5.3.1.6 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0009052  pentose-phosphate shunt, non-oxidative branch


molecular_function

GO:0004751  ribose-5-phosphate isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004632s00040687.1PF06026.9Rib_5-P_isom_A1072856.80E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.190
SRR1783600control39.429
SRR1783602moderate drought stress46.898
SRR1811619moderate drought stress46.470

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.295
DRR006520Root Summer glycyrrhizin high producing strain33.618
DRR006521Root Winter glycyrrhizin high producing strain6.042
DRR006522Root Winter glycyrrhizin high producing strain5.798
DRR006523Root Summer glycyrrhizin low producing strain35.436
DRR006524Root Summer glycyrrhizin low producing strain34.909
DRR006525Leaf Summer glycyrrhizin high producing strain323.286
DRR006526Leaf Summer glycyrrhizin high producing strain321.028

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.203
SRR2868004Drought Stress(Tissue:root)47.751
SRR2967015Control (Tissue:root)42.773

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave145.218
SRR9715740Leave146.349
SRR9715741Leave81.281
SRR9715739Root52.638
SRR9715742Root27.822
SRR9715743Root30.516

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.236
SRR8749028MeJA induced 9h19.647
SRR8749029MeJA induced 9h24.584
SRR8749030Uninduced19.263
SRR8749031Uninduced9.341
SRR8749032Uninduced32.362

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.569
SRR8400027Control-Root35.955

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved