Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur004632s00040690.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28300.1	4.00E-29	Duplicated homeodomain-like superfamily protein
NR	XP_006604841.1	1.68E-149	PREDICTED: trihelix transcription factor GTL2-like isoform X1 [Glycine max]
Swissprot	tr\|Q8H181\|GTL2_ARATH	2.00E-79	Trihelix transcription factor GTL2
trEMBL	tr\|I1NC80\|I1NC80_SOYBN	6.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G43280.1}

Sequence

Transcript Sequence

>Glyur004632s00040690.1
CTTGTAAAAAGGGTGTCGGGGACGGGGACTCTCTTATCTTTTCCATTCCATGTAATTAAGGGACAATCGATCTCCTTGATAAACCAGAGAGAGAGAGAGAGAACTTGGTTAGTGTTATGTTATGTAAAGGTGGTTGTAGCAGCTCCTGCAAGTAACGCAAGGTAGCCCCCAACAAACATGTTGGATGGAGCAGAGCAGCACCAATTCCACCAATTCGTAGTAGCACCACCAATTAGGACCACTCTTCCACTTCACTTATCCTTCTCCCTCCATGCCGCCTCTTCTACCCCCAATGATACAACCAGCTTCCTACTACCCTTTGATCCTTACAACAATTACCCCTCTCATTCTCAATCCCATCATCATCATCATCATCAACATCAATTGCCCCTTCAAACCAACAACCTCTTGCACCACCACCACCACTCTCCTCCTCCTCCTCCTCCCCACAACAACAAAGATCAAGACAAGGAATTACCAAACCGCACCTTTTNTTCTTCAGAGATCGAAATTAGAGACGATGATCATCAGAGGCAGTTACCAGCTTGTGCGTCGATCGATGATTCCTGGAGTAACGATGAAGTGCTGGCAATGCTGAGGATCAGATCTAGCATGGAGAATTGGTTCCCAGAGCTCACATGGGACCATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGTAAGGAGAAGTTTGAAGATGAAAACTGCAGATATTTCATCCACGACATGATTAACTACGGCAAGAACATTAATAATAATAATAATAATAATAACAATTACCGGTTTGTTGGTGAGCTGGAAGAAGAGGTTTATATTCAAAACCCTGCAGATCATGATGATCCGGGTGACGAAGATGGGGTTGTAATTGCCGAAGAAAAGGAAAAGACCCAGCAGCAACAACTCATTGGGAATTCGAGAGACGTAATTGACACTANTGATCACGATGACGTGGCAGTGAGGACCAAACAATGTGTCATCATGGAAAACAANAAGAAGAAGAAGTCGTCAAGGGAGAGCAGGAAGAGGAAGAGGCGCGAGAGGTTAGAGGTGTTCAAGTGTTTCTGTGAGGGCGTTGTGAAGCAGATGATGGCCCAACAAGAGGAGATACACAGGAGGCTCCTCCAAGACATGCTCAAGAGAGACGAAGAGAAGCTCGCAAGAGAGGAAGCGTGGAAAAGGCAAGAGATGGAAAGGGTGGACAAGGAGCTTGATTTGATGGCACAAGAACAAGCCATCGCTGGGGATAGACAAGCCACCNTCATTGAATTCTTGAAGAACTATGTAGCAACAAGAATCCAAAACTCCAAGAAATCTAGTTCTTGTTCCCCAATATTGCACTCACAAAACTTCCGTAATCCTCCTGAGCCAACACCTTCTTCCAACGTGAATTTTCTAGATCATCAAACTACTACTACTACTACTACTACTACTCTTCCTCCTACTTGTCAAAACAATAATTCGGCTAATTTCCCCATAATTAAGTTGGGTACACCAGCTACACTGGCAGCAGAAAACCCTAGCTCGATCTCAAGTGACACGGTACTATTACAACAAGTTCCTTCATCTTCCAATTCATCTCCGGCCAATGATAATCAGGCAGTAGAGTCAAATTCCAGATGTACCCCTGGTGGTGTGGATGTTGCAGGGAGAAGGTGGCCAAGAGATGAAGTGATGGCGCTGATAAACCTGAGGTGCAGTCTAAACAACAGCATTAACAGTGCTAATAATGTTGTTGTTGAAGATCATGAGCAGCATCAAAAGGAATTAGGGANTAGTANTANNANNANNNGTANTANNANNANNNGTAGTAGTGGTACTCCACCTGTGTGGGAGAGAATATCGGAAGGGATGAGGGGGATGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGGAAGACCAAGGATAATAATAATGTGAATAGGAGGAAGAGGTCACTCGACTCTAGGACCTGCCCCTACTTCCATCAACTCACCTCTCTCTATAATACCACTCACCACGGAAATCAACTTGCTGCTGCTGCTGCTCCGCAATCTCATATTCAAAGCCCCGTAAACCACTGCGATTCTACCGCCATTTCTGGACAAATTGTTCCACCGGATCATCATGCCCCAAGCTAGCTACCTGATTGATCAGTGTTCTACTTCTACCTCGAGTGGTATAATTAATTAAGAATTATAATGCATGTTAGTTGATCATGGAGGTAGGTGAGATAACTAATTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04632	9736	12453	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004632s00040690.1	PF13837.1	Myb_DNA-bind_4	129	188	5.30E-11
Glyur004632s00040690.1	PF13837.1	Myb_DNA-bind_4	497	616	5.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.161
SRR1783600	control	2.295
SRR1783602	moderate drought stress	2.854
SRR1811619	moderate drought stress	2.930

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.514
DRR006520	Root Summer glycyrrhizin high producing strain	3.254
DRR006521	Root Winter glycyrrhizin high producing strain	0.974
DRR006522	Root Winter glycyrrhizin high producing strain	0.856
DRR006523	Root Summer glycyrrhizin low producing strain	1.712
DRR006524	Root Summer glycyrrhizin low producing strain	1.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.202

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.673
SRR2868004	Drought Stress(Tissue:root)	1.255
SRR2967015	Control (Tissue:root)	0.903

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.288
SRR9715740	Leave	3.255
SRR9715741	Leave	2.724
SRR9715739	Root	2.062
SRR9715742	Root	4.553
SRR9715743	Root	3.812

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.087
SRR8749028	MeJA induced 9h	0.015
SRR8749029	MeJA induced 9h	0.079
SRR8749030	Uninduced	0.153
SRR8749031	Uninduced	0.237
SRR8749032	Uninduced	0.162

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.880
SRR8400027	Control-Root	2.696