Gene detail information of Glyur004658s00046099.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73050.1 | 1.00E-140 | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| NR | XP_004507539.1 | 0 | PREDICTED: (R)-mandelonitrile lyase-like [Cicer arietinum] |
| COG | YP_007093192.1 | 5.00E-20 | glucose-methanol-choline oxidoreductase [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q9SSM2|MDLL_ARATH | 0 | (R)-mandelonitrile lyase-like (Precursor) |
| trEMBL | tr|G7JVJ8|G7JVJ8_MEDTR | 0 | Glucose-methanol-choline (GMC) oxidoreductase family protein {ECO:0000313|EMBL:AES86335.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04658 | 8301 | 10427 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08248 | MDL3 | EC:4.1.2.10 | Cyanoamino acid metabolism | map00460 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004658s00046099.1 | PF00732.14 | GMC_oxred_N | 160 | 285 | 5.90E-15 |
| Glyur004658s00046099.1 | PF05199.8 | GMC_oxred_C | 339 | 461 | 2.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.053 |
| SRR1783600 | control | 0.063 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.078 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.221 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.031 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.103 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.240 |
| SRR9715742 | Root | 0.033 |
| SRR9715743 | Root | 0.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.025 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.301 |
| SRR8400027 | Control-Root | 0.146 |