Gene detail information of Glyur004695s00039094.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11520.10aspartate aminotransferase 3
NRKEH36020.10aspartate aminotransferase [Medicago truncatula]
COGYP_002892667.18.00E-124aromatic amino acid aminotransferase [Tolumonas auensis DSM 9187]
Swissprottr|P28011|AAT1_MEDSA0Aspartate aminotransferase 1
trEMBLtr|A0A072VCX2|A0A072VCX2_MEDTR0Aspartate aminotransferase {ECO:0000256|RuleBase:RU000480}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold04695804112815-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14454GOT1 EC:2.6.1.1 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Alanine, aspartate and glutamate metabolismmap00250
Cysteine and methionine metabolismmap00270
Arginine biosynthesismap00220
Arginine and proline metabolismmap00330
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004695s00039094.1PF00155.16Aminotran_1_2904731.40E-91


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control139.551
SRR1783600control140.225
SRR1783602moderate drought stress86.850
SRR1811619moderate drought stress85.837

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain188.419
DRR006520Root Summer glycyrrhizin high producing strain186.111
DRR006521Root Winter glycyrrhizin high producing strain461.064
DRR006522Root Winter glycyrrhizin high producing strain449.728
DRR006523Root Summer glycyrrhizin low producing strain253.889
DRR006524Root Summer glycyrrhizin low producing strain254.190
DRR006525Leaf Summer glycyrrhizin high producing strain40.889
DRR006526Leaf Summer glycyrrhizin high producing strain41.008

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)132.496
SRR2868004Drought Stress(Tissue:root)114.289
SRR2967015Control (Tissue:root)102.190

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.617
SRR9715740Leave38.017
SRR9715741Leave60.345
SRR9715739Root220.260
SRR9715742Root191.928
SRR9715743Root199.908

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h482.776
SRR8749028MeJA induced 9h631.487
SRR8749029MeJA induced 9h687.543
SRR8749030Uninduced569.297
SRR8749031Uninduced590.813
SRR8749032Uninduced774.744

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root218.156
SRR8400027Control-Root248.376

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved