Gene detail

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Gene detail information of Glyur004739s00039518.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	2.00E-158	Leucine-rich repeat protein kinase family protein
NR	XP_003630002.1	0	Kinase-like protein [Medicago truncatula]
COG	YP_001192956.1	4.00E-57	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7L9K4\|G7L9K4_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AET04478.1}

Sequence

Transcript Sequence

>Glyur004739s00039518.1
ATGGCTTTGTTTTCTCAACAACTTGTTCATTTTGCCTTACTAATCATCATTCTCACCCTTAATTTCCACAACCTTTTGGTTGGTGTATCATCAACCACTCTAAGCATCACCACAGACAGAGAAGCCTTAATCTCACTCAAGTCTCAATTGAGCAATGACAGTGACACCTCTCACCCATTATCCTCTTGGAGCCATCAGAATTCATCTCCTTGCAATTGGACTGGTGTCCTTTGTGACAAGCATGGCCAGAGAGTGACTGGCTTGGATCTTTCAAGCTTAGGACTCTCAGGTCACTTGAGCCCTTATATTGGTAACTTGTCCTCTCTTCAGTCCCTCCAATTGCAGGATAACCAACTCACAGGTGTGATTCCTGACCAAATTGGCAATCTATATAGTTTGAGAGTTCTAAATATGAGCTCCAACAGATTAGAAGGAGTGCTTCCTTCAAACCTGACTTACTTAGATGAGCTCCAGATTCTTGATTTATCCTCAAACAAGTTTGTCAGCAGAATTCCTGAAGATATCAGCAGCTTGAAAAGGCTGCAGGTATTGAAACTGGGAAAGAATAGCCTCTATGGTGCAATTCCAGCAGCTTTAGGAAATATTTCTTCTCTCAGGAATATCAGTTTTGGCACCAACTCTCTCAGTGGTTGGATTCCAAGTGACTTGGGTAGGCTCCATAATCTAGTTGAGCTTGATCTCACTATTAACAATCTCACTGGGACTGTTCCACCTGTTATATATAATCTGTCTTCCCTTGTTAACTTGGCCTTGGCTGCAAACTCCTTGTGGGGTGAGATTCCTCAGGATGTTGGTCATAAGCTTCCAAATCTCCTAGTGTTCAACTTCTGCTTCAATAAGTTCACTGGTAGAATTCCAGGCTCAGGAGTCAATGGTTTGGACTTCATTACTTCATTGGCAAACAGCACCAACCTGAACTTTCTGGCAATTGATGGCAATATGCTGGAAGGTGTAATTCCTGAAACCATTGGCAATCTCTCCAAAAATCTCTCAAAATTATACATGGGAGGGAATCATTTCAATGGAAGCATACCTGCTTCCATTGGCCGTCTTAGCGGCTTGAGGTTGTTAAACTTGAGCTACAATTCACTCACAGGAGAAATTCCACAGGAGTTAGGCCAGTTAGAGGAGCTACAAGAGCTATCTCTGGCTGGAAATCAGATATCAGGAGGTATTCCAAGCTCCCTTGGAAGTCTCCTAAAGTTAAACCAGATTGATTTGTCAAGAAATGAACTTGTGGGTAGAATACCCATCAGTTTTGGGAACTTCCAAAACCTGCTCTACATGGACTTATCTAGCAACAAACTCAATGGAAGCATACCTGTGGAAATGCTCAACCTCCCAACTTTGAGCAATGTTTTAAACTTGTCTATGAACTTGTTGAGTGGACCAATACCTCAAGTTGGGAAATTGAGTAGTATTGCCTCCATTGACTTTTCCAGCAACAAATTGGATGGTAGCATCCCCAGCTCATTTAGCAATTGTTTGAGCTTGGAGAGATTGTTTTTGGCCCAGAATCTGCTTTCAGGTCCCATTCCAAAAACTCTTGGAGATGTGAGAGGCTTGGAAGCTTTGGACCTGTCCTCCAACCTACTGTCTGGATCCATTCCTGTTGAACTTCAAAACCTGCATGTCCTTCAGCTTTTAAACCTCTCTTACAATGATTTAGAAGGAACCATTCCTAGTGGTGGAATTTTTCAAAATCTCTCTGCTGTCCATTTAGAAGGCAATAAAAGACTCTGTTCGCATTTTGCATGTGTGCCTCGCGACCATGGAAAAAGACATGTCAGACTCTACATCATCACAGCCATCGTGCTAATACTGCACAGAAAGGTGAAGGTAACAACAACAATAACATCTGAACTGCTAAAGCCTCAGGCTCCAATGGTCTCTTATGACGAGCTTCGCCTGGCAACTGAGGAGTTCAGCCAGGAAAATTTACTAGGAATTGGAAGCTTTGGCTCAGTGTATAAAGGCCAACTAAGTCAAGGAAATACTGTTGCAGTGAAAGTGCTTGACACCCTAAGAACTGGTTCCTTAAAGAGTTTCTTTGCAGAGTGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGTATTGATTTTAGAAACAATGATTTTCTGGCTCTAGTCTATGAGTACTTATGTAATGGGAGCTTGGAAGATTGGATTAAGGGGAGGAGAAAGCACGAAGATGGAAATGGTTTGAACCTCATGGAGAGACTGAATATAGCTATAGATGCTGCTTGTGCATTGGATTACCTGCACAATGATAGTGAAAATCCTATTGTGCATTGTGATCTCAAGCCAAGCAACATTCTCCTGGATGAAGATATGACTGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTACTGATTCAAAGATCAACAAACCAAGTTTCCATTAGCTCCACTCATGTCCTAAAGGGTTCAATTGGTTACATCCCACCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGAGATGTATATAGTTTCGGGATAGTGTTACTTGAGGTCTTCTCTGGGAAAAGTCCAACAGATGACTGCTTCACAGGAGGTCTAAGCATAACAAAATGGGTGCAATCAGCATTCAAAAGCAAGACTGTGCAAGTCATTGACCCTCAGCTGCAATCCCTCATTTTTCATGGTGACCCTGCCAAAGGCCCCAATCTACAACTCCATTGTGTGGAAGCAATTGTAGGAGTTGGCCTATCCTGCACTATAGACAATCCAGATGAACGCATTGGCATTAGAGACGCTGTTCGCCAACTAAAAGCTGCTAGGGACTCTCTTCTGAAGAACTCTGATATTAATAGTCCTACTGGTCCTACCAAGCATTAGTTTCAAGTTTCAATAAAATGATTTGGGGAGAGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04739	6750	10078	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004739s00039518.1	PF08263.7	LRRNT_2	38	79	8.40E-11
Glyur004739s00039518.1	PF13855.1	LRR_8	107	167	1.40E-08
Glyur004739s00039518.1	PF13855.1	LRR_8	336	395	1.80E-07
Glyur004739s00039518.1	PF00560.28	LRR_1	529	550	0.26
Glyur004739s00039518.1	PF00560.28	LRR_1	553	576	0.73
Glyur004739s00039518.1	PF00069.20	Pkinase	651	866	6.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.227
SRR1783600	control	0.224
SRR1783602	moderate drought stress	0.058
SRR1811619	moderate drought stress	0.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.591
DRR006520	Root Summer glycyrrhizin high producing strain	1.459
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.433

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.869
SRR2868004	Drought Stress(Tissue:root)	0.496
SRR2967015	Control (Tissue:root)	0.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	15.102
SRR9715740	Leave	32.557
SRR9715741	Leave	20.364
SRR9715739	Root	1.000
SRR9715742	Root	3.661
SRR9715743	Root	2.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.725
SRR8749028	MeJA induced 9h	0.248
SRR8749029	MeJA induced 9h	0.194
SRR8749030	Uninduced	0.630
SRR8749031	Uninduced	0.104
SRR8749032	Uninduced	0.166

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.404
SRR8400027	Control-Root	0.138