Gene detail

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Gene detail information of Glyur004770s00038801.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36550.1	5.00E-117	ARM repeat superfamily protein
NR	XP_003612032.1	0	U-box domain-containing protein [Medicago truncatula]
COG	YP_001958455.1	3.00E-13	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|O23225\|PUB5_ARATH	5.00E-137	U-box domain-containing protein 5
trEMBL	tr\|G7KEW9\|G7KEW9_MEDTR	0	Ubiquitin-protein ligase {ECO:0000313\|EMBL:AES94990.1}

Sequence

Transcript Sequence

>Glyur004770s00038801.1
ATCTCTTCCGAAGAATCTCCCGTTGACGGGTCTCTCTTACTTTTTCTCTCTCTTTCCATGAAACCCCGCAGTCACATCCTTAGTCAAAGACTCTTCATTGTTGTTTCTTCAGTTCTTCTCTAGTACAAATCAAAATCATTATCCTTTTCATGGGCATGCGTGCTTTGCTTTGCTTTCACTGGAACATCATTCAGCTTAATTAGTCCCTTTTTTTTTGGTTGGTGGGTTTTTCTTCTTTTTTCCCCATCGTTCTCCTCAAGTCTGAGCTTTTTGTTGTTTACTCGGTTGAGTTCCTCTGTCGTTTTAGCCTCTCTCTTTCTCTATCCCGTGGGAAATATGCTACTTTTTTACTTCAATAATGATTCCATTGAACCGTTGCTTTTTGCTTATCTACGGTAGAGCTGAATTAAATGGCTATTTTTCTGTTTTAAGAACTTGGGTGTCCATTAGCACTATGGGGTGGTTCGGAATATGATCTTTATTTTTATTAGTACTGCTTATTTGGTGGTGGTTATTCAGTAGTAATCTAATNGGTTGAACGGAGAAGAAGAAAAAGACTTTTAGTGTGTTCTATTGGAATTATTCTCCCCTTTAAGCAGAGAGGAGGAGGTTACTTCTTAATTATCACTGTTATTCTAGCTGTAGGACACTCCCCTTGATGAGAACCGATAGTGGTGAAGATGTGGAGATGTTACCAAATCCCCGNTCCTTTAAGGTACATAAATATGAAATAACAACACCCAGTGGTACCAGATATTTTATTACCTTTATTGATGATTTTAGCAGAAAGACATGGGTGTATTTCCTGAAGCAGAAATTAGAAGCATGTGAGGCCTTTAAGACATTCAAGGCATTTGTAGAAANGCAAAGTGGCTACAGAATCAAAGAATTGCATTTCACTATTATGTTTATTGAGGATGTTTTTGAGGTCTTCTATTTTCAATGTTTATTGTATTGATTTATTTGTTTACAAGAAGGGGAAAAAAATTTATTTGTTTACAAGAAGGGGAAAAAAAAACTTAGAACCTTCTTACTGTCAATTTTTTCCCTGGTATTTATTTGAGTGCAGATTGTTATTTTCTTTAGGATATCTTGGTGCCTTCTTCAACTACACTTGGATATTAGAACTAAGGATTCTATTGACGGAATTCATGTTAACAGGTACACAGTAAATTGTGCACAGAGCTCATGAAATTAGTGGACAGAATCTCAAGAATATTTCCGGACATAGAGGACACACGGCCACGATGCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAACGCAATTGATAAAGCCAAACTACTTCTGCAACATTGCTCGGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTCAAGATGCCAAAAAGCAACAAGGTCATTAGAGAAAAGCTTAATCCCGATTCAGNGTATGGTTCCAGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCTACATTTGTTCTGGACTCTGCTGAAGAAGAGGCTGGGAGGGTTGTAAAAGAATTGCTTCAGCAAGGTACTCCAACGTCAGATTCCGTGGACGATTCCGAAGTTAAAGCTCTTCAGTTTGCAGCACCACGACTGAATATAACATCCCAAAAGGCCATTGTAATAGAGAAACGATCTATCATGAAGTTGCTAGACAAAGTTGGACCGAATGACCAGAAAAAGAAGATGATCCTGAAATATCTCATGTATCTACTGAAAAAGCATGGAAAATTCATCGTGGGAGAACGAATGGAGAAGGTCTATTCCCGTTGTGAAGAATCAATTGCAACGGAGAACTCTAGTCACGATTCTCTAAGAAGCCATGGTGTTGAGTCAGATCCTAGATTGAACTATGGTCAGTATAGAACTCACACCAGTGAGTTGGATAGAGTTACACCCCCTGAGGAATACAAGTGCCCAATATCATCAAGATTGATGTATGATCCTGTTATCATTGCATCAGGAGTAACTTATGAAAGGATGTGGATAAGAAAGTGGTTTGATGAGGGTAAAACTATATGCCCAAAAACCAAAAAGAAACTACCCCATATGTCATTGACTCCAAATGTTGTCATGAAGGACTTAATAACAAAATGGTGCANAAGTAATGGAGTCCCCATTCTCGACCCGAGTAGGCAAGCAGAAGATCTCCATTCATGGGAAGCTTCAAACACCTCCATTAAGAGTTTTGGAAGTTATTTCAATGATTTGAACTTGCCAGTGGATCTTAGTAACATGTCACTTGGATCATTGGATACTAGTTATAGTTCAGATGCCTCGCGTGTTAAGATCACTCATGACTTGAATTTGATGTCGATCAAGACTAGTCAAAATTCTCATCAGCATCGAGGTCATGCAGAGATACATGACACAGATTTGATGCTCTTGCCTACACTTCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAAGATCTGAAAGATCATTTCAAAAACAATAGCCANGCTATTTTTTCTGTGTCACCTGAGAACTTTGTTGAACCACTAGTCAGATTTCTGAGCAATGCAAGTGATCTGCACGATGTCAAAGCGCTGAGAGCTGGAACTCAGCTTCTAAATGGTATGGCTAATTTAAGTGAAGATACATTCATTAAATTGGCAAGTCTTCTTGATTCAGAAGTGATAGGAGAAGTGCTTGCCATAATGGAAGAACTGTCTGGGGATGGGTGTACTAAAGCTAAAATTGCAGCATCCAGTGCACTCACTTCTGTTTTAAAATTACTTGATTCAGACAACAAAGGGTTCCAACAACAAGCTATAAGAATAATGTACAATTTGTCCTTCAATAGTCAAGTTTGTCCCCACATGCTATCTCTCAAATGCATCCCAAAATTGCTGCCATTTTTCAAAGATAGGGCCGTTTTGAGATACTGCATATACATATTGAAGAATCTTTGCGATAATGAAGAGGGTAGGAATTCCATTGCTGAAACCAAGGGGTGCATNTCTTCTGTTGCTGAGATACTTGAGACAGGTAGTAATGAGGAGCAAGAACATGCACTGGCTGTTCTAGCATCTCTATGTTCTCAACGTGTGGACTATTGTAAGTTGGTTATGGATGAGGAAGTTATNACTCCTCTTTTCTTTATCTCCCAGAATGGAAATGATAAAGGAAAGGAAAGGGCGTTGGAACTGCTCCATCTTTTGAGAGATGCTAGTAATAAGTGTGTTGAGAATGAAGATTGCTCTTCTGAACCAAATACCAACAACACCTCTCGAGATTCCAACACTCCCCCTGAAGAAAACAGATCATCAAAGAGATCACCATTTCTGAAGAAACTACCATTGTTCTCAAAATCCAGTTCTCATGCACCAAAAACCAAAAGGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04770	42	5169	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004770s00038801.1	PF04564.10	U-box	246	315	2.10E-18
Glyur004770s00038801.1	PF05804.7	KAP	499	622	0.0001

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.294
SRR1783600	control	5.315
SRR1783602	moderate drought stress	6.461
SRR1811619	moderate drought stress	6.364

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.249
DRR006520	Root Summer glycyrrhizin high producing strain	11.036
DRR006521	Root Winter glycyrrhizin high producing strain	5.849
DRR006522	Root Winter glycyrrhizin high producing strain	5.624
DRR006523	Root Summer glycyrrhizin low producing strain	41.026
DRR006524	Root Summer glycyrrhizin low producing strain	41.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.040
SRR2868004	Drought Stress(Tissue:root)	32.163
SRR2967015	Control (Tissue:root)	30.515

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	26.492
SRR9715740	Leave	27.317
SRR9715741	Leave	43.681
SRR9715739	Root	3.641
SRR9715742	Root	22.660
SRR9715743	Root	18.201

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.220
SRR8749028	MeJA induced 9h	24.865
SRR8749029	MeJA induced 9h	15.399
SRR8749030	Uninduced	29.457
SRR8749031	Uninduced	21.506
SRR8749032	Uninduced	14.397

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.749
SRR8400027	Control-Root	24.042