Gene detail information of Glyur004770s00038806.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21710.1 | 4.00E-16 | DNA-directed RNA polymerase family protein |
| NR | ADV71906.1 | 7.43E-18 | RNA polymerase II second largest subunit [Rhododendron rarum] |
| Swissprot | tr|Q42877|RPB2_SOLLC | 1.00E-18 | DNA-directed RNA polymerase II subunit RPB2 |
| trEMBL | tr|G0TBR3|G0TBR3_9ERIC | 3.00E-18 | RNA polymerase II second largest subunit {ECO:0000313|EMBL:ADV71906.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04770 | 11391 | 11958 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03010 | RPB2, POLR2B | EC:2.7.7.6 | Purine metabolism | map00230 |
| Pyrimidine metabolism | map00240 | |||
| RNA polymerase | map03020 | |||
| Huntington's disease | map05016 | |||
| Epstein-Barr virus infection | map05169 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.098 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.363 |
| SRR1811619 | moderate drought stress | 0.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.908 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.517 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.203 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.156 |
| SRR2967015 | Control (Tissue:root) | 0.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.110 |
| SRR9715740 | Leave | 0.058 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.344 |
| SRR9715742 | Root | 0.055 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.021 |
| SRR8749028 | MeJA induced 9h | 0.426 |
| SRR8749029 | MeJA induced 9h | 0.640 |
| SRR8749030 | Uninduced | 0.937 |
| SRR8749031 | Uninduced | 0.188 |
| SRR8749032 | Uninduced | 1.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.326 |
| SRR8400027 | Control-Root | 0.213 |