Gene detail information of Glyur004773s00043233.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28390.1 | 7.00E-119 | P-glycoprotein 18 |
| NR | XP_003517643.1 | 0 | PREDICTED: putative ABC transporter B family member 8-like [Glycine max] |
| COG | YP_005367043.1 | 8.00E-84 | efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259] |
| Swissprot | tr|Q9LHK4|AB8B_ARATH | 3.00E-178 | Putative ABC transporter B family member 8 |
| trEMBL | tr|I1J4J3|I1J4J3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G01160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04773 | 191 | 9157 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05658 | ABCB1, CD243 | EC:3.6.3.44 | ABC transporters | map02010 |
| Bile secretion | map04976 | |||
| MicroRNAs in cancer | map05206 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004773s00043233.1 | PF00664.18 | ABC_membrane | 3 | 150 | 6.20E-24 |
| Glyur004773s00043233.1 | PF00005.22 | ABC_tran | 222 | 367 | 7.60E-24 |
| Glyur004773s00043233.1 | PF00005.22 | ABC_tran | 520 | 663 | 8.40E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.527 |
| SRR1783600 | control | 5.630 |
| SRR1783602 | moderate drought stress | 3.877 |
| SRR1811619 | moderate drought stress | 3.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.710 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.514 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.208 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.810 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.181 |
| SRR2967015 | Control (Tissue:root) | 11.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.061 |
| SRR9715740 | Leave | 0.057 |
| SRR9715741 | Leave | 0.030 |
| SRR9715739 | Root | 0.331 |
| SRR9715742 | Root | 2.921 |
| SRR9715743 | Root | 2.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.032 |
| SRR8749028 | MeJA induced 9h | 0.090 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 1.368 |
| SRR8749031 | Uninduced | 0.022 |
| SRR8749032 | Uninduced | 1.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.111 |
| SRR8400027 | Control-Root | 5.388 |