Gene detail information of Glyur004798s00040872.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G32600.14.00E-94hydroxyproline-rich glycoprotein family protein
NRXP_008442733.11.47E-135PREDICTED: splicing factor 3A subunit 2 [Cucumis melo]
trEMBLtr|I1M5W5|I1M5W5_SOYBN6.00E-136Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44430.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold047981072912378+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004798s00040872.1PF12874.2zf-met52762.80E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.844
SRR1783600control27.250
SRR1783602moderate drought stress34.702
SRR1811619moderate drought stress34.303

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.530
DRR006520Root Summer glycyrrhizin high producing strain26.671
DRR006521Root Winter glycyrrhizin high producing strain42.167
DRR006522Root Winter glycyrrhizin high producing strain40.515
DRR006523Root Summer glycyrrhizin low producing strain26.784
DRR006524Root Summer glycyrrhizin low producing strain26.624
DRR006525Leaf Summer glycyrrhizin high producing strain17.426
DRR006526Leaf Summer glycyrrhizin high producing strain17.568

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.834
SRR2868004Drought Stress(Tissue:root)34.375
SRR2967015Control (Tissue:root)36.193

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.689
SRR9715740Leave14.851
SRR9715741Leave15.445
SRR9715739Root25.263
SRR9715742Root36.690
SRR9715743Root32.020

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h59.778
SRR8749028MeJA induced 9h75.893
SRR8749029MeJA induced 9h55.233
SRR8749030Uninduced50.876
SRR8749031Uninduced31.609
SRR8749032Uninduced27.319

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.747
SRR8400027Control-Root42.148

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved