Gene detail information of Glyur004859s00040111.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15090.1 | 5.00E-29 | FRS (FAR1 Related Sequences) transcription factor family |
| NR | CAN74112.1 | 9.15E-92 | hypothetical protein VITISV_025549 [Vitis vinifera] |
| Swissprot | tr|Q9SWG3|FAR1_ARATH | 6.00E-30 | Protein FAR-RED IMPAIRED RESPONSE 1 |
| trEMBL | tr|A5B370|A5B370_VITVI | 3.00E-92 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN74112.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04859 | 6689 | 9649 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004859s00040111.1 | PF03101.10 | FAR1 | 64 | 155 | 3.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.045 |
| SRR1811619 | moderate drought stress | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.104 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.068 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.051 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.065 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.149 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.027 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.001 |
| SRR2967015 | Control (Tissue:root) | 0.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.007 |
| SRR8749028 | MeJA induced 9h | 0.124 |
| SRR8749029 | MeJA induced 9h | 0.077 |
| SRR8749030 | Uninduced | 0.162 |
| SRR8749031 | Uninduced | 0.045 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.022 |
| SRR8400027 | Control-Root | 0.056 |