Gene detail

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Gene detail information of Glyur004891s00041954.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53810.1	2.00E-93	Concanavalin A-like lectin protein kinase family protein
NR	XP_004492168.1	1.63E-167	PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Cicer arietinum]
COG	NP_864945.1	2.00E-12	glucosesorbosone dehydrogenase [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9M345\|LRK42_ARATH	3.00E-113	L-type lectin-domain containing receptor kinase IV.2 (Precursor)
trEMBL	tr\|V7B6L6\|V7B6L6_PHAVU	3.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:ESW12493.1}

Sequence

Transcript Sequence

>Glyur004891s00041954.1
ATGTCTCCCAAGCTTGTTGCATTAGTAGTATCTTTGCTGGTGACATTGGTAGTAGCCAGTGCTGAAGATAGCACTTTCACCTATAATGGGTTCCAATCATCTCATTTGTATCTTGATGGTAGTGCTGAGATAACTTCCAATGGCCTACTTAGACTCACCAATGACACCAAGCAACAAAAGGGTCATGCTTTCTACCAAAATGCTATAGCTTTCAAGAACAGTTCCTTCAATGGAAGTGGGTCTTCTTTCTCCACTACTTTTGTGTTTGCCATAAGATCTGAGTATCCAAATCTGAGTGGCCATGGAATTGTTTTTGTGGTTTCTCCAACAAAAGGGGTTCCGGGTTCTCTCCCAAGCCAGTACCTTGGCCTCTTCAATGAAACAAACAATGGCAACAACATCAACCATGTTTTTGGCATGGAATTGGATACAATTGAGAACAGTGAGTTTGGTGATATCAATGACAACCATGTTGGGATTGATATCAATGGGTTGAAGTCAGAAAAATCAGCTCCTGCAGGATATTACAGTGGTGGTGGTGAGTTCAAGAATTTGAGCCTTTTCAGTGGCTACCCAATGAAGGTATGGGTGGAATATGATGGGGTAAAGAAGCAGATTAATGTTACTTTAGCTCCAATCAACACTGGTAAACCAGAAAACCCTCTGTTATCATTGGCCAAAGATCTTTCTTCAGTTCTGAACAATAGCATGTATGTTGGATTCTCATCCTCTACTGGGTCAGTTCTAACTTCCCATTATATCCTTGGTTGGAGCTTCAAGATCAATGGCAAGGCTCAAGAACTTGTAATCTCTGAACTTCCCAAGCTACCTACACTAGGTGATAAAAATGAGTCCAAGGTTTTCATTATTGGGTTGCCTCTTATATCACTCAGTTTGGTCCTCACGGTAGCAATAGCAGTGTTTCATGTCATCAAAAAAAGGAAGAAAAAGTTTTCTGAGCTGCATGAAGATTGGGAGCAGGACTATGGCCCTCATAGATTCAAGTACAAAGATCTTTACTTTGCCACAAAGGGTAAGGCCACTACAAGCTCTGATGTGTTTTCCTTTGGTGCATTTCTGCTGGAGGTTGCTTGTGGTAGGAGGCCCATAGAGCAAGTAAGGGGAAGTGAGAGTGCAATTCTGGTTGATTGGGTGTATGATTGCTGGAAAAGAGGTGATATTGTTGAGGCAAAGGACCCAAATTTGGGGACAGATCATTGTATGTCAGAGGAGGTTGAACTTGTGTTGAAGCTTGGTTTGTTGTGTTCACATTCAGAGCCTTTGGCTAGGCCAAGCATGCGCCAAGTTGTTAGGTATTTGGAGAGGGATGTACCTCTTCCTGATTTGTCTTTTCTTAGCTTATCTTCCACTGGCTTGACTTTTGGCCAACATGGAAATGTTCAGGACTTTCCAATGTCATGTCCATCTTCTTTGGATAGGCCATTCTCTCATACTTCTTCAATTGCTGAATCACTTCTCTCTGGTGGTCGAACCCCATCACTTTACTCTACAAACCAGCAAGCCTTGTTGCTTCAAAATCGTTACTTGAATCGATCAGCGACTCACAAGAAGAGAGTTTCCTTCAGGGTCCAAGCAGCCAAGCCCCCTGCTGGTGTGGAATTTCCAAAAGTACAGCCTCAATTTAAAGCCCCATTTCTTGGGTTCACAAAGACTGCAGAAGTATGGAACTCTAGAGCTTGCATGATTGGAATCATTGGAGTTTTCATTGTAGAAGCTATAATAAACAAGGGAATACTTCAGCTTGTGTGGGTGGTCTTACTTCTGGTTACAACTGTAGCCAGTGCTGAAGATAGCGGTTTCACCTATAATGGGTTCCAATCATCTCATTTGTATCTTGATGGTAGTGCTGAGTTAACCCCCAATGGCCTACTTGGACTCACCAATGACACCAAGCAACAAAAGGGTCATGCTTTCCACCAAAATCCTATAGTTTTCAAGAACAACACCTTCAATGGAAGTGTGTCCTCTTTCTCAACCACTTTTGTGTTTGCCATAAGACCTGAGTACCCAACTATGAGTGGTCATGGGATTGTTTTTGTGGTTTCTCCCACAAAAGGGCTTCCAGATTCTCTTCCAANTCAGTACCTTGGCCTCTTCAATGAGGCCAACAACGGCAACAGTAGCAACCATGTCTTTGGTGTTGAACTTGACACCACTCAAAGCAGTGAGTTTGGTGATATCAATGACAACCATGTTGGAATTGATATCAATGACTTAAACTCAGCTAATTCAACTCCTGCTGGATATTATAGTGATGCTGGTGGTAGGTTTAAGAATTTGACCCTTTCCAGTGGCTACCCAATGCAGATTGATGTTACTTTAGCTCCAATCAATATTGGTAAACCACAACACCCTTTGTTATCATTGACCAAAGACCTTTCTCCAATTCTGAACAATAGCATGTATGTTGGATTCTCATCCTCTACTGGGTCATTCTATACTTCACACTACGTTCTTGGTTGGAGCTTCAAGGTCAATGGCAAGGCTCAAGAACTTGTAATATCTGAACTCCNTAAGCTTCCTAGACTTGGTGATAAAAAGGAGTCCAAGTTTTTGACAATTGGGTTGCCTTTGATATTGCTCAGTTTGGTTTCCATGATAACTTTGGTGGTGCTTCATNTCATCAAGAGGAAGAAGAAGTTTACTGAGCTACTTGAAGATTGGGAGCAGGAATATGGCCCACACAGATTCAAGTTCAAAGATCTTTACTTTGCCACAGAGGGAGACATAAAGGCTAGCAACGTGTTACTAGATGCAGAATTGAATGGTAGATTGGGGGATTTTGGTCTTGCAAGGTTGTATGACCATGGAACTGACCCCCAAACTACCCATGTGGTTGGAACTCTTGGATATCTGGCCCCTGAACATACCAGAACA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold04891	731	11971	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004891s00041954.1	PF00139.14	Lectin_legB	23	260	8.40E-83
Glyur004891s00041954.1	PF00139.14	Lectin_legB	605	831	8.20E-72
Glyur004891s00041954.1	PF00069.20	Pkinase	916	964	4.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.140
SRR1783600	control	1.879
SRR1783602	moderate drought stress	1.531
SRR1811619	moderate drought stress	1.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.704
DRR006520	Root Summer glycyrrhizin high producing strain	1.793
DRR006521	Root Winter glycyrrhizin high producing strain	0.405
DRR006522	Root Winter glycyrrhizin high producing strain	0.367
DRR006523	Root Summer glycyrrhizin low producing strain	3.224
DRR006524	Root Summer glycyrrhizin low producing strain	3.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.179
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.507

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.070
SRR2868004	Drought Stress(Tissue:root)	3.537
SRR2967015	Control (Tissue:root)	3.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	13.701
SRR9715740	Leave	27.296
SRR9715741	Leave	15.353
SRR9715739	Root	1.535
SRR9715742	Root	1.784
SRR9715743	Root	1.384

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.491
SRR8749028	MeJA induced 9h	3.598
SRR8749029	MeJA induced 9h	2.936
SRR8749030	Uninduced	2.117
SRR8749031	Uninduced	0.705
SRR8749032	Uninduced	1.615

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.950
SRR8400027	Control-Root	3.314