Gene detail information of Glyur004892s00040931.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02860.1 | 9.00E-127 | SPX (SYG1/Pho81/XPR1) domain-containing protein |
| NR | KHN20404.1 | 0 | E3 ubiquitin-protein ligase BAH1 [Glycine soja] |
| Swissprot | tr|Q9SRX9|BAH1_ARATH | 2.00E-164 | E3 ubiquitin-protein ligase BAH1 |
| trEMBL | tr|I1JQL7|I1JQL7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G37210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04892 | 8376 | 11480 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004892s00040931.1 | PF03105.14 | SPX | 104 | 153 | 5.60E-09 |
| Glyur004892s00040931.1 | PF13920.1 | zf-C3HC4_3 | 218 | 270 | 2.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.848 |
| SRR1783600 | control | 4.939 |
| SRR1783602 | moderate drought stress | 3.458 |
| SRR1811619 | moderate drought stress | 3.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.301 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.227 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.335 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.964 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.174 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.149 |
| SRR2967015 | Control (Tissue:root) | 17.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.683 |
| SRR9715740 | Leave | 4.489 |
| SRR9715741 | Leave | 5.062 |
| SRR9715739 | Root | 8.352 |
| SRR9715742 | Root | 10.461 |
| SRR9715743 | Root | 10.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.501 |
| SRR8749028 | MeJA induced 9h | 70.640 |
| SRR8749029 | MeJA induced 9h | 65.698 |
| SRR8749030 | Uninduced | 43.241 |
| SRR8749031 | Uninduced | 36.655 |
| SRR8749032 | Uninduced | 23.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.071 |
| SRR8400027 | Control-Root | 24.652 |