Gene detail information of Glyur004893s00046077.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06600.22.00E-34ubiquitin-specific protease 12
NRXP_002514434.19.22E-52Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
Swissprottr|Q9FPT1|UBP12_ARATH3.00E-42Ubiquitin carboxyl-terminal hydrolase 12
trEMBLtr|B9RL15|B9RL15_RICCO3.00E-52Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0489311152197-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11838USP7, UBP15 EC:3.4.19.12 FoxO signaling pathway map04068
Viral carcinogenesismap05203
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.640
SRR1783600control2.730
SRR1783602moderate drought stress2.688
SRR1811619moderate drought stress2.598

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.171
DRR006520Root Summer glycyrrhizin high producing strain2.625
DRR006521Root Winter glycyrrhizin high producing strain1.857
DRR006522Root Winter glycyrrhizin high producing strain2.545
DRR006523Root Summer glycyrrhizin low producing strain1.860
DRR006524Root Summer glycyrrhizin low producing strain1.694
DRR006525Leaf Summer glycyrrhizin high producing strain1.623
DRR006526Leaf Summer glycyrrhizin high producing strain0.700

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.214
SRR2868004Drought Stress(Tissue:root)3.158
SRR2967015Control (Tissue:root)1.659

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.328
SRR9715740Leave0.910
SRR9715741Leave0.987
SRR9715739Root0.246
SRR9715742Root4.538
SRR9715743Root2.193

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.059
SRR8749028MeJA induced 9h1.334
SRR8749029MeJA induced 9h0.163
SRR8749030Uninduced0.128
SRR8749031Uninduced0.059
SRR8749032Uninduced0.044

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.815
SRR8400027Control-Root3.412

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved