Gene detail information of Glyur004901s00044573.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30740.1 | 7.00E-20 | FAD-binding Berberine family protein |
| NR | XP_004504926.1 | 3.13E-41 | PREDICTED: cannabidiolic acid synthase-like 2-like [Cicer arietinum] |
| Swissprot | tr|Q9SVG4|RETOL_ARATH | 1.00E-20 | Reticuline oxidase-like protein (Precursor) |
| trEMBL | tr|G7ZYG5|G7ZYG5_MEDTR | 5.00E-41 | Reticuline oxidase {ECO:0000313|EMBL:AES84253.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04901 | 3418 | 5283 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | AA7 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004901s00044573.1 | PF08031.7 | BBE | 30 | 66 | 1.20E-16 |
| Glyur004901s00044573.1 | PF08031.7 | BBE | 122 | 158 | 1.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.906 |
| SRR1783600 | control | 1.644 |
| SRR1783602 | moderate drought stress | 1.001 |
| SRR1811619 | moderate drought stress | 1.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.172 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.712 |
| SRR2967015 | Control (Tissue:root) | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.940 |
| SRR9715742 | Root | 0.094 |
| SRR9715743 | Root | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.114 |
| SRR8749028 | MeJA induced 9h | 0.025 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.167 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.273 |
| SRR8400027 | Control-Root | 0.269 |