Gene detail information of Glyur004902s00035583.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25560.11.00E-118CHY-type/CTCHY-type/RING-type Zinc finger protein
NRKHN12074.10RING finger and CHY zinc finger domain-containing protein 1 [Glycine soja]
trEMBLtr|I1MWK2|I1MWK2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G29800.5}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0490229818563+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004902s00035583.1PF05495.7zf-CHY2263091.10E-15
Glyur004902s00035583.1PF13639.1zf-RING_23604044.10E-10
Glyur004902s00035583.1PF14599.1zinc_ribbon_64094681.50E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.103
SRR1783600control54.245
SRR1783602moderate drought stress45.849
SRR1811619moderate drought stress40.431

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.838
DRR006520Root Summer glycyrrhizin high producing strain52.509
DRR006521Root Winter glycyrrhizin high producing strain30.339
DRR006522Root Winter glycyrrhizin high producing strain34.855
DRR006523Root Summer glycyrrhizin low producing strain166.293
DRR006524Root Summer glycyrrhizin low producing strain145.685
DRR006525Leaf Summer glycyrrhizin high producing strain35.023
DRR006526Leaf Summer glycyrrhizin high producing strain34.326

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)69.832
SRR2868004Drought Stress(Tissue:root)83.212
SRR2967015Control (Tissue:root)68.879

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.788
SRR9715740Leave40.623
SRR9715741Leave35.655
SRR9715739Root20.194
SRR9715742Root31.136
SRR9715743Root26.894

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h160.962
SRR8749028MeJA induced 9h224.880
SRR8749029MeJA induced 9h308.012
SRR8749030Uninduced266.071
SRR8749031Uninduced264.956
SRR8749032Uninduced160.532

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.074
SRR8400027Control-Root32.687

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved