Gene detail information of Glyur004903s00044981.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31940.1 | 1.00E-125 | cytochrome P450, family 82, subfamily C, polypeptide 4 |
| NR | XP_007133366.1 | 0 | hypothetical protein PHAVU_011G173200g [Phaseolus vulgaris] |
| COG | YP_007058171.1 | 4.00E-20 | cytochrome P450 [Rivularia sp. PCC 7116] |
| Swissprot | tr|O49859|C82A4_SOYBN | 0 | Cytochrome P450 82A4 |
| trEMBL | tr|V7AJB8|V7AJB8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW05360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04903 | 5903 | 9614 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP82C4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004903s00044981.1 | PF00067.17 | p450 | 40 | 405 | 5.60E-54 |
| Glyur004903s00044981.1 | PF00067.17 | p450 | 406 | 476 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.486 |
| SRR1783600 | control | 3.914 |
| SRR1783602 | moderate drought stress | 20.394 |
| SRR1811619 | moderate drought stress | 20.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.449 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.901 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.539 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.559 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.477 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.017 |
| SRR2967015 | Control (Tissue:root) | 7.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.853 |
| SRR9715740 | Leave | 24.000 |
| SRR9715741 | Leave | 178.106 |
| SRR9715739 | Root | 2.742 |
| SRR9715742 | Root | 3.528 |
| SRR9715743 | Root | 2.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.181 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.055 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.666 |
| SRR8400027 | Control-Root | 2.836 |