Gene detail information of Glyur004980s00044771.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G46410.15.00E-13Homeodomain-like superfamily protein
NRXP_010267757.11.10E-31PREDICTED: transcription factor CPC-like [Nelumbo nucifera]
Swissprottr|O22059|CPC_ARATH9.00E-17Transcription factor CPC
trEMBLtr|D7TEM7|D7TEM7_VITVI2.00E-31Putative uncharacterized protein {ECO:0000313|EMBL:CBI28950.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold04980968711518-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004980s00044771.1PF00249.26Myb_DNA-binding27681.50E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.893
SRR1783600control11.930
SRR1783602moderate drought stress5.801
SRR1811619moderate drought stress5.801

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.019
DRR006520Root Summer glycyrrhizin high producing strain30.731
DRR006521Root Winter glycyrrhizin high producing strain7.362
DRR006522Root Winter glycyrrhizin high producing strain7.348
DRR006523Root Summer glycyrrhizin low producing strain3.048
DRR006524Root Summer glycyrrhizin low producing strain3.349
DRR006525Leaf Summer glycyrrhizin high producing strain22.275
DRR006526Leaf Summer glycyrrhizin high producing strain22.657

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.477
SRR2868004Drought Stress(Tissue:root)34.636
SRR2967015Control (Tissue:root)33.998

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave58.769
SRR9715740Leave38.786
SRR9715741Leave34.793
SRR9715739Root10.926
SRR9715742Root99.772
SRR9715743Root77.174

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.061
SRR8749028MeJA induced 9h1.576
SRR8749029MeJA induced 9h0.578
SRR8749030Uninduced8.503
SRR8749031Uninduced2.006
SRR8749032Uninduced1.332

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root73.744
SRR8400027Control-Root117.463

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved