Gene detail

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Gene detail information of Glyur005002s00040156.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33580.1	1.00E-94	beta carbonic anhydrase 5
NR	AFK46145.1	0	unknown [Lotus japonicus]
COG	YP_008546886.1	1.00E-44	carbonate dehydratase [Sulfuricella denitrificans skB26]
Swissprot	tr\|Q94CE3\|BCA5_ARATH	2.00E-116	Beta carbonic anhydrase 5, chloroplastic (Precursor)
trEMBL	tr\|I3T0V3\|I3T0V3_LOTJA	0	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}

Sequence

Transcript Sequence

>Glyur005002s00040156.1
AAATTACGTTGGGCCCAAACAAATAGTAGAACAACAAGATCCCGACAAGTCAGAAAGTCAAAAGCTAAACCTTGACGGAATCATGAGGAAATGGTGGTGCTGGTGCAAAAGAATNTTTTATCTTCAACACCTTGGTTTCTCCGTCTTTGTTGGAGACAACCCAATCCCAACACATACATGTTTACTCACGTAACCAACTTTACCCACCACTCTTTTTTGGTTTTTACCACTTTGATACTTTGATTTATTTGATTACCAAACCAAACCAACCATGACCCTTTTATTCACTTCCCAATTTTCACTCGNGTTTGAGCTCTCCTATGGCTGTTCCTGCGCGAATCTCTGTTTCAGCTGACCCCTTTGCTTCCAAGCCTCTTCCTTTATCCTCCTCCAGTTACTGCATTCAACCTCTGACATCAAGGATCTCTGGGAAAATTGAGCAAACCCATTTCAGATTGTTGACGGCATTTAGGAAAAGTCAAGGTTTAACTTTAAAGGCTTCTATGGGGCCTCCAGGATCTACACAGCAACTTAATAACAGCAAGCTAGAGACTTTAGCTGAAGCTAAAGACAGATGCGATATATTTGATGATCTGNAGGATAGATTTTTAAGTTTTAAGAAGAATATATACATGAACAACATTGAACAGTTTGAAATTCTTGCCAAGGTTCAAGAACCAAAGTTCATGGTTATTGCCTGTGCAGATTCCAGGGTATGCCCCTCAAATGTTTTGGGATTTCGACCAGGAGAAGCATTCATGATTCGCAATGTTGCTAATCTGGTTCCTCCCTTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTAGAATTTGCTGTAAACACCCTTAAGGTTGAGAACATCTTAGTCATTGGCCACAGCTGCTGTGGGGGTATACGTGCCCTTATGGGTATGCAAGATGATGCCAATGCAAGCTTTATAAAAAGTTGGGTTGTTGTTGGGAAGAATGCAAAAGTGAAAACCGAAGCTGCTGCTTCCAACCTTAGCTTTGATGAGCAATGCAAATATTGTGAGAAGGAATCAATTAACCATTCCTTATCAAACCTACTTAGTTACCCCTGGATCGAAGAAAAAGTGGAGAATGAAGAACTCGTTATTCATGGTGGTTATTATGACTTTATTGACTGTTCATTTGAGAAATGGACATTGGATTACAGGGGAACCAAACTTGAGGGAAATGGCAGAATTGCTACCAAAAACAAAATATTTTGGACTTTAAAGGCTCATCACCATGAGCCCGAGCTTGCTCAGGCTACTGACACATGTGACACTACATGTGGAGATGAGAGCATGGAATCAGCTGCAAACTCTGGACATCTCAACAGCATCACTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05002	219	3688	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01673	cynT, can	EC:4.2.1.1	Nitrogen metabolism	map00910

Gene Ontology

biological_process
GO:0015976 carbon utilization

molecular_function GO:0004089 carbonate dehydratase activity GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005002s00040156.1	PF00484.14	Pro_CA	123	273	1.30E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.692
SRR1783600	control	4.752
SRR1783602	moderate drought stress	8.358
SRR1811619	moderate drought stress	8.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.680
DRR006520	Root Summer glycyrrhizin high producing strain	1.736
DRR006521	Root Winter glycyrrhizin high producing strain	0.925
DRR006522	Root Winter glycyrrhizin high producing strain	0.964
DRR006523	Root Summer glycyrrhizin low producing strain	0.610
DRR006524	Root Summer glycyrrhizin low producing strain	0.578
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.447

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	44.511
SRR2868004	Drought Stress(Tissue:root)	38.201
SRR2967015	Control (Tissue:root)	28.969

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	40.311
SRR9715740	Leave	45.998
SRR9715741	Leave	48.440
SRR9715739	Root	4.677
SRR9715742	Root	8.055
SRR9715743	Root	6.686

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.694
SRR8749028	MeJA induced 9h	0.981
SRR8749029	MeJA induced 9h	2.037
SRR8749030	Uninduced	1.387
SRR8749031	Uninduced	1.218
SRR8749032	Uninduced	0.344

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	33.192
SRR8400027	Control-Root	33.950