Gene detail information of Glyur005016s00041159.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35800.10RNA polymerase II large subunit
NRXP_004512182.10PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum]
COGNP_579292.10DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM 3638]
Swissprottr|P18616|NRPB1_ARATH0DNA-directed RNA polymerase II subunit 1
trEMBLtr|K7LNL8|K7LNL8_SOYBN0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0501615379331+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03006RPB1, POLR2A EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020
Huntington's diseasemap05016
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0006366  transcription from RNA polymerase II promoter


cellular_component

GO:0005665  DNA-directed RNA polymerase II, core complex


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005016s00041159.1PF04997.7RNA_pol_Rpb1_1143402.60E-105
Glyur005016s00041159.1PF00623.15RNA_pol_Rpb1_23423895.90E-15
Glyur005016s00041159.1PF00623.15RNA_pol_Rpb1_23934711.30E-37
Glyur005016s00041159.1PF04983.13RNA_pol_Rpb1_34756384.40E-47
Glyur005016s00041159.1PF05000.12RNA_pol_Rpb1_46667695.50E-39
Glyur005016s00041159.1PF04998.12RNA_pol_Rpb1_577613661.00E-105
Glyur005016s00041159.1PF04992.9RNA_pol_Rpb1_684210261.90E-67
Glyur005016s00041159.1PF04990.7RNA_pol_Rpb1_7111112458.90E-52
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R148715017.4
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R150215150.17
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R151615290.029
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R153015430.56
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R154415570.033
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R155815710.3
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R157215850.35
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R158615990.19
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R160016130.023
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R161416270.35
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R162816410.37
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R164216550.19
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R165616690.054
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R167016830.37
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R171017230.11
Glyur005016s00041159.1PF05001.8RNA_pol_Rpb1_R172417375


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.325
SRR1783600control28.853
SRR1783602moderate drought stress41.241
SRR1811619moderate drought stress41.182

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.718
DRR006520Root Summer glycyrrhizin high producing strain24.211
DRR006521Root Winter glycyrrhizin high producing strain21.237
DRR006522Root Winter glycyrrhizin high producing strain20.903
DRR006523Root Summer glycyrrhizin low producing strain20.898
DRR006524Root Summer glycyrrhizin low producing strain21.034
DRR006525Leaf Summer glycyrrhizin high producing strain16.035
DRR006526Leaf Summer glycyrrhizin high producing strain16.250

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.607
SRR2868004Drought Stress(Tissue:root)29.304
SRR2967015Control (Tissue:root)32.407

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.313
SRR9715740Leave11.767
SRR9715741Leave22.505
SRR9715739Root6.677
SRR9715742Root33.353
SRR9715743Root29.256

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.193
SRR8749028MeJA induced 9h19.647
SRR8749029MeJA induced 9h16.850
SRR8749030Uninduced8.311
SRR8749031Uninduced6.834
SRR8749032Uninduced8.967

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.493
SRR8400027Control-Root25.161

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved