Gene detail information of Glyur005019s00043466.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G04240.21.00E-44RING/U-box superfamily protein
NRXP_007141371.11.29E-83hypothetical protein PHAVU_008G190100g [Phaseolus vulgaris]
Swissprottr|Q9SI09|XERIC_ARATH2.00E-55Probable E3 ubiquitin-protein ligase XERICO
trEMBLtr|V7B703|V7B703_PHAVU5.00E-84Uncharacterized protein {ECO:0000313|EMBL:ESW13365.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold05019906910519-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005019s00043466.1PF13639.1zf-RING_21932378.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.172
SRR1783600control25.065
SRR1783602moderate drought stress27.328
SRR1811619moderate drought stress27.171

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.788
DRR006520Root Summer glycyrrhizin high producing strain40.850
DRR006521Root Winter glycyrrhizin high producing strain21.640
DRR006522Root Winter glycyrrhizin high producing strain20.049
DRR006523Root Summer glycyrrhizin low producing strain27.233
DRR006524Root Summer glycyrrhizin low producing strain28.597
DRR006525Leaf Summer glycyrrhizin high producing strain11.128
DRR006526Leaf Summer glycyrrhizin high producing strain10.921

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.698
SRR2868004Drought Stress(Tissue:root)15.937
SRR2967015Control (Tissue:root)12.897

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.384
SRR9715740Leave5.161
SRR9715741Leave4.008
SRR9715739Root2.108
SRR9715742Root2.807
SRR9715743Root2.798

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.984
SRR8749028MeJA induced 9h6.881
SRR8749029MeJA induced 9h5.823
SRR8749030Uninduced2.995
SRR8749031Uninduced5.001
SRR8749032Uninduced4.561

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.701
SRR8400027Control-Root14.814

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved