Gene detail information of Glyur005030s00042456.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G07960.1 | 0 | Cellulose-synthase-like C12 |
| NR | XP_010061616.1 | 0 | PREDICTED: probable xyloglucan glycosyltransferase 12 [Eucalyptus grandis] |
| COG | YP_004055443.1 | 3.00E-59 | family 2 glycosyl transferase [Marivirga tractuosa DSM 4126] |
| Swissprot | tr|Q9ZQB9|CSLCC_ARATH | 0 | Probable xyloglucan glycosyltransferase 12 |
| trEMBL | tr|A0A059BRM9|A0A059BRM9_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW68609.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05030 | 5875 | 9674 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005030s00042456.1 | PF13641.1 | Glyco_tranf_2_3 | 262 | 482 | 3.90E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.797 |
| SRR1783600 | control | 10.903 |
| SRR1783602 | moderate drought stress | 8.738 |
| SRR1811619 | moderate drought stress | 8.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.413 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.188 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.881 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.663 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.862 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.487 |
| SRR2967015 | Control (Tissue:root) | 12.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.304 |
| SRR9715740 | Leave | 2.554 |
| SRR9715741 | Leave | 3.478 |
| SRR9715739 | Root | 4.920 |
| SRR9715742 | Root | 14.760 |
| SRR9715743 | Root | 13.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.364 |
| SRR8749028 | MeJA induced 9h | 44.129 |
| SRR8749029 | MeJA induced 9h | 65.446 |
| SRR8749030 | Uninduced | 18.001 |
| SRR8749031 | Uninduced | 6.100 |
| SRR8749032 | Uninduced | 25.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.629 |
| SRR8400027 | Control-Root | 33.336 |