Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur005052s00040497.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18500.2	1.00E-48	Protein kinase superfamily protein
NR	XP_006604952.1	0	PREDICTED: probable receptor-like protein kinase At5g18500-like [Glycine max]
COG	YP_002759750.1	3.00E-19	putative protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q8L4H4\|NORK_MEDTR	8.00E-54	Nodulation receptor kinase (Precursor)
trEMBL	tr\|K7MVV6\|K7MVV6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G01381.1}

Sequence

Transcript Sequence

>Glyur005052s00040497.1
ATGGCTTTATGGATTTGGAAAAGAAATGTGTTTCCAACATCCATCTTGATTGTTTGCATCTTCATTCTGATCACCACTACAAAATTTTCAACTTCCTTGGCTCTGGAGGCAGGATGCAGCCTTAGAATTCAGCTTTCACCACTGTTGAATCATTCAAGCTGTGGAGCAGCATTTGATGCTTACCTCTATGCACTTGGTCAGCATGCAAATCTAACAGGCAAGGTTTTCTTGGATTCTACTGAACAAAGGATTTGTCTATCTAGAATAATAAAGGGTTTTAATAAAGATGATATTTTTGGTGGTTGTGGAATTGAGAGCCTAACAAGTGGTGCTGGTGCTGGTGCTGGTGGATGTTCTGACTTCTTGGTTGCTGATGTTAGGAATAAATTAGGAAATGAGATTACAAGTTTAGATGAAAACTGTCAACTTGAGACTACTTCAGGTAACAAGTGGGAATTACAATCATGTCCTTCCTGCCTNAAGACATGGAAATCCATAGGAGAGACTGATTCCAGAAAGACTGAAGCTGATCTTTGTAGAATTGCTGTNCTTGTGACATTGATAAGCAGCAAAATTGAAAATGAGATTTATGTCCACACAATTTTTGTGTCGTCTCTTCCTGACCATCAAAGTTTTTATATGGAATTAGGTATATGGATTCTGACTGGAGTAACAATAGGGGTTATTTTGATAACAGTTATCATCACTTCATACATCATGTTTCGTAGATACTTTAGATCAGCCCCACCAAGATATGAAGTGACATTTGGAGACATGTTAAAGAAAACTTCTTGTCCAAGAATTCCTATCAAGGAAGTGTATGCTGCCACCAACCATCTCAATGAAATGAATATCATTGGGGAAGGAACTGCAGGTAAGGTCTATAAAGGCACAATGACAAATAATCAGCAAGTTGCAGTAAAGCACATAATCAATGATGATGGAAATATGGAGACTTTTGTCAGAGAAGTGACAAGCCTATCTCATGTCAGGCACCCAAATCTTGTTGCTTTGCTTGGTTTCTGTATTGAAGGAGATGAATGTTTTCTTGTCTATGAACTATGTCCCAATGGGAGTCTTTCAGAGTGGCTATTTGGCAAGAACAAGGTGCTGTCCTGGATACAGAGGCTGGAAATTGCAATTGATAGTGCTAGAGGTCTTTGGTTTTTGCACACATATCCAGGAGGATGCATTGTTCACCGTGACATCAAGGCAAAGCTATCAGATTTTGGACTGTCTAAAGTTATTGAGGTGGGTGAAACATATGTTAGTTCAGAAGTGAGAGGAACTTTTGGATATATGGATCCTGAGTACCAAAGCAACCGCCATGTGAATTCATCTGGTGATGTTTACAGCTTTGGCATGGTACTTCTGCAAATCCTCTCTGGAAAGAAGGTCATAAATTTGAAACTGAAGAGACCAATGTCACTGAAATTTGCTGACCCTAGACTTCAAGGAGAGTACTCTGAGGAAGCATTTGATTTTACACTTAGGCTGGCTCTTTCATGCACAGCCCTCAACCAACAACGCCCCTCCATGGAGCAGGTTGTCAAAAGACTAGAAGAGGCCTTGTTAATTTCAAAAGGGAGGAAGGTTTCTACTACAGAAACTCCAGCAGACAATATTTCTAATGATCCATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05052	2153	5787	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005052s00040497.1	PF07714.12	Pkinase_Tyr	283	520	1.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.244
SRR1783600	control	0.136
SRR1783602	moderate drought stress	0.268
SRR1811619	moderate drought stress	0.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.033
DRR006520	Root Summer glycyrrhizin high producing strain	0.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.399
DRR006522	Root Winter glycyrrhizin high producing strain	0.426
DRR006523	Root Summer glycyrrhizin low producing strain	0.033
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.100

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.083
SRR2868004	Drought Stress(Tissue:root)	0.063
SRR2967015	Control (Tissue:root)	0.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.127
SRR9715740	Leave	0.016
SRR9715741	Leave	0.037
SRR9715739	Root	0.041
SRR9715742	Root	0.005
SRR9715743	Root	0.111

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.414
SRR8749028	MeJA induced 9h	0.899
SRR8749029	MeJA induced 9h	0.581
SRR8749030	Uninduced	0.976
SRR8749031	Uninduced	1.080
SRR8749032	Uninduced	1.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.070
SRR8400027	Control-Root	0.076