Gene detail information of Glyur005080s00046284.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47670.1 | 2.00E-15 | nuclear factor Y, subunit B6 |
| NR | XP_010669682.1 | 1.53E-19 | PREDICTED: nuclear transcription factor Y subunit B-9-like [Beta vulgaris subsp. vulgaris] |
| Swissprot | tr|Q84W66|NFYB6_ARATH | 1.00E-18 | Nuclear transcription factor Y subunit B-6 |
| trEMBL | tr|V7BK21|V7BK21_PHAVU | 8.00E-18 | Uncharacterized protein {ECO:0000313|EMBL:ESW17383.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05080 | 129 | 365 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005080s00046284.1 | PF00808.18 | CBFD_NFYB_HMF | 1 | 55 | 1.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.921 |
| SRR1783600 | control | 29.086 |
| SRR1783602 | moderate drought stress | 42.573 |
| SRR1811619 | moderate drought stress | 41.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.043 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.621 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.592 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.586 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.435 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.834 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.048 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.178 |
| SRR2967015 | Control (Tissue:root) | 24.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.928 |
| SRR9715740 | Leave | 10.631 |
| SRR9715741 | Leave | 13.412 |
| SRR9715739 | Root | 3.930 |
| SRR9715742 | Root | 3.011 |
| SRR9715743 | Root | 4.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.308 |
| SRR8749028 | MeJA induced 9h | 6.805 |
| SRR8749029 | MeJA induced 9h | 6.289 |
| SRR8749030 | Uninduced | 8.565 |
| SRR8749031 | Uninduced | 1.225 |
| SRR8749032 | Uninduced | 4.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.504 |
| SRR8400027 | Control-Root | 28.275 |