Gene detail information of Glyur005086s00042064.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01960.1 | 4.00E-135 | RING/U-box superfamily protein |
| NR | XP_007136401.1 | 0 | hypothetical protein PHAVU_009G041900g [Phaseolus vulgaris] |
| Swissprot | tr|Q6NPT7|HRD1B_ARATH | 1.00E-11 | ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305} |
| trEMBL | tr|V7ASU5|V7ASU5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08395.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05086 | 769 | 7765 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005086s00042064.1 | PF13639.1 | zf-RING_2 | 406 | 445 | 9.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.331 |
| SRR1783600 | control | 11.954 |
| SRR1783602 | moderate drought stress | 11.134 |
| SRR1811619 | moderate drought stress | 11.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.951 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.835 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.218 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.015 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.250 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.266 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.716 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.692 |
| SRR2967015 | Control (Tissue:root) | 27.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.569 |
| SRR9715740 | Leave | 26.664 |
| SRR9715741 | Leave | 29.976 |
| SRR9715739 | Root | 10.806 |
| SRR9715742 | Root | 20.605 |
| SRR9715743 | Root | 18.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.593 |
| SRR8749028 | MeJA induced 9h | 24.843 |
| SRR8749029 | MeJA induced 9h | 27.990 |
| SRR8749030 | Uninduced | 37.910 |
| SRR8749031 | Uninduced | 37.848 |
| SRR8749032 | Uninduced | 47.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.378 |
| SRR8400027 | Control-Root | 25.793 |