Gene detail information of Glyur005102s00040028.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G16570.17.00E-159glutamine synthetase 1;4
NRP32289.10RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase [Vigna aconitifolia]
COGYP_008733525.12.00E-89glutamate--ammonia ligase [Actinoplanes friuliensis DSM 7358]
Swissprottr|P32289|GLNA_VIGAC0Glutamine synthetase nodule isozyme
trEMBLtr|G7J9B8|G7J9B8_MEDTR0Glutamine synthetase {ECO:0000256|RuleBase:RU004356}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0510235908077-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01915glnA, GLUL EC:6.3.1.2 Biosynthesis of amino acids map01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Glutamatergic synapsemap04724
GABAergic synapsemap04727


Gene Ontology

biological_process

GO:0006542  glutamine biosynthetic process

GO:0006807  nitrogen compound metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004356  glutamate-ammonia ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005102s00040028.1PF03951.14Gln-synt_N19973.90E-18
Glyur005102s00040028.1PF00120.19Gln-synt_C1042606.70E-40
Glyur005102s00040028.1PF00120.19Gln-synt_C2653064.90E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control153.703
SRR1783600control154.119
SRR1783602moderate drought stress152.741
SRR1811619moderate drought stress149.421

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain77.786
DRR006520Root Summer glycyrrhizin high producing strain76.482
DRR006521Root Winter glycyrrhizin high producing strain79.775
DRR006522Root Winter glycyrrhizin high producing strain78.870
DRR006523Root Summer glycyrrhizin low producing strain116.233
DRR006524Root Summer glycyrrhizin low producing strain115.334
DRR006525Leaf Summer glycyrrhizin high producing strain237.595
DRR006526Leaf Summer glycyrrhizin high producing strain233.724

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)695.079
SRR2868004Drought Stress(Tissue:root)755.050
SRR2967015Control (Tissue:root)457.439

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave859.381
SRR9715740Leave819.147
SRR9715741Leave1222.635
SRR9715739Root153.099
SRR9715742Root186.181
SRR9715743Root182.401

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h166.844
SRR8749028MeJA induced 9h309.451
SRR8749029MeJA induced 9h179.733
SRR8749030Uninduced343.096
SRR8749031Uninduced269.029
SRR8749032Uninduced199.740

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root333.080
SRR8400027Control-Root225.390

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved