Gene detail information of Glyur005138s00043873.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49430.15.00E-72long-chain acyl-CoA synthetase 2
NRXP_003606857.13.81E-98Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]
COGYP_001546493.12.00E-26AMP-dependent synthetase/ligase [Herpetosiphon aurantiacus DSM 785]
Swissprottr|Q9XIA9|LACS2_ARATH3.00E-85Long chain acyl-CoA synthetase 2
trEMBLtr|A0A072UX04|A0A072UX04_MEDTR5.00E-96Long-chain fatty acyl CoA ligase {ECO:0000313|EMBL:KEH30360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0513857457601-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005138s00043873.1PF00501.23AMP-binding3583.70E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.509
SRR1783600control0.739
SRR1783602moderate drought stress0.389
SRR1811619moderate drought stress0.666

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.221
DRR006520Root Summer glycyrrhizin high producing strain0.904
DRR006521Root Winter glycyrrhizin high producing strain0.389
DRR006522Root Winter glycyrrhizin high producing strain0.382
DRR006523Root Summer glycyrrhizin low producing strain0.215
DRR006524Root Summer glycyrrhizin low producing strain0.450
DRR006525Leaf Summer glycyrrhizin high producing strain4.056
DRR006526Leaf Summer glycyrrhizin high producing strain5.035

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.965
SRR2868004Drought Stress(Tissue:root)0.151
SRR2967015Control (Tissue:root)0.521

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.087
SRR9715740Leave7.123
SRR9715741Leave7.758
SRR9715739Root0.084
SRR9715742Root0.742
SRR9715743Root0.497

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.581
SRR8749028MeJA induced 9h0.273
SRR8749029MeJA induced 9h0.435
SRR8749030Uninduced0.646
SRR8749031Uninduced0.000
SRR8749032Uninduced0.755

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.076
SRR8400027Control-Root0.595

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved