Gene detail information of Glyur005142s00040374.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64050.10glutamate tRNA synthetase
NRXP_004510174.10PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum]
COGYP_004112198.15.00E-145glutamyl-tRNA synthetase [Desulfurispirillum indicum S5]
Swissprottr|Q9FEA2|SYE_ARATH0Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|A0A072TKH0|A0A072TKH0_MEDTR0Glutamyl-tRNA synthetase {ECO:0000313|EMBL:KEH18014.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold051425985426-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01885EARS, gltX EC:6.1.1.17 Porphyrin and chlorophyll metabolism map00860
Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006424  glutamyl-tRNA aminoacylation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000049  tRNA binding

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004818  glutamate-tRNA ligase activity

GO:0005524  ATP binding

GO:0016876  ligase activity, forming aminoacyl-tRNA and related compounds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005142s00040374.1PF00749.16tRNA-synt_1c543694.30E-107


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.980
SRR1783600control11.828
SRR1783602moderate drought stress10.053
SRR1811619moderate drought stress9.809

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.603
DRR006520Root Summer glycyrrhizin high producing strain13.824
DRR006521Root Winter glycyrrhizin high producing strain16.953
DRR006522Root Winter glycyrrhizin high producing strain15.673
DRR006523Root Summer glycyrrhizin low producing strain11.906
DRR006524Root Summer glycyrrhizin low producing strain12.773
DRR006525Leaf Summer glycyrrhizin high producing strain15.815
DRR006526Leaf Summer glycyrrhizin high producing strain15.483

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.223
SRR2868004Drought Stress(Tissue:root)11.196
SRR2967015Control (Tissue:root)12.332

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.353
SRR9715740Leave22.169
SRR9715741Leave18.168
SRR9715739Root6.140
SRR9715742Root13.706
SRR9715743Root10.280

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.817
SRR8749028MeJA induced 9h5.390
SRR8749029MeJA induced 9h3.861
SRR8749030Uninduced2.782
SRR8749031Uninduced0.886
SRR8749032Uninduced1.270

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.419
SRR8400027Control-Root26.265

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved