Gene detail information of Glyur005194s00034335.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66460.17.00E-113Glycosyl hydrolase superfamily protein
NRXP_003554587.10PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Glycine max]
COGYP_003406129.19.00E-55Mannan endo-1,4-beta-mannosidase [Haloterrigena turkmenica DSM 5511]
Swissprottr|Q8L5J1|MAN4_SOLLC4.00E-149Mannan endo-1,4-beta-mannosidase 4 (Precursor)
trEMBLtr|I1NBK5|I1NBK5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G41090.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0519460549993-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19355MAN EC:3.2.1.78 Fructose and mannose metabolism map00051


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005194s00034335.1PF00150.13Cellulase693322.80E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.133
SRR1783600control2.141
SRR1783602moderate drought stress1.849
SRR1811619moderate drought stress1.809

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.450
DRR006520Root Summer glycyrrhizin high producing strain1.410
DRR006521Root Winter glycyrrhizin high producing strain1.387
DRR006522Root Winter glycyrrhizin high producing strain1.314
DRR006523Root Summer glycyrrhizin low producing strain1.391
DRR006524Root Summer glycyrrhizin low producing strain1.239
DRR006525Leaf Summer glycyrrhizin high producing strain45.301
DRR006526Leaf Summer glycyrrhizin high producing strain44.934

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.274
SRR2868004Drought Stress(Tissue:root)0.257
SRR2967015Control (Tissue:root)0.848

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.203
SRR9715740Leave98.962
SRR9715741Leave20.744
SRR9715739Root0.028
SRR9715742Root0.344
SRR9715743Root0.181

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.053
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.144
SRR8749031Uninduced0.000
SRR8749032Uninduced0.033

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.899
SRR8400027Control-Root1.730

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved