Gene detail information of Glyur005200s00042765.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28530.1 | 2.00E-05 | FAR1-related sequence 10 |
| NR | XP_003590599.1 | 2.53E-24 | FAR1-related protein [Medicago truncatula] |
| Swissprot | tr|Q9LKR4|FRS10_ARATH | 1.00E-05 | Putative protein FAR1-RELATED SEQUENCE 10 |
| trEMBL | tr|G7IUN8|G7IUN8_MEDTR | 2.00E-24 | FAR1 DNA-binding domain protein {ECO:0000313|EMBL:AES67962.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05200 | 1805 | 7960 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005200s00042765.1 | PF03101.10 | FAR1 | 170 | 239 | 2.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.909 |
| SRR1783600 | control | 3.703 |
| SRR1783602 | moderate drought stress | 3.458 |
| SRR1811619 | moderate drought stress | 3.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.547 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.261 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.223 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.243 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.306 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.105 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.531 |
| SRR2967015 | Control (Tissue:root) | 8.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.464 |
| SRR9715740 | Leave | 5.222 |
| SRR9715741 | Leave | 11.918 |
| SRR9715739 | Root | 0.045 |
| SRR9715742 | Root | 0.930 |
| SRR9715743 | Root | 0.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.596 |
| SRR8749028 | MeJA induced 9h | 0.321 |
| SRR8749029 | MeJA induced 9h | 0.291 |
| SRR8749030 | Uninduced | 0.245 |
| SRR8749031 | Uninduced | 0.603 |
| SRR8749032 | Uninduced | 0.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.165 |
| SRR8400027 | Control-Root | 4.064 |