Gene detail

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Gene detail information of Glyur005223s00044641.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19070.1	2.00E-49	spermidine hydroxycinnamoyl transferase
NR	XP_004493179.1	6.98E-156	PREDICTED: spermidine hydroxycinnamoyl transferase-like [Cicer arietinum]
Swissprot	tr\|O64470\|SHT_ARATH	5.00E-62	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|I1ML04\|I1ML04_SOYBN	1.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G04360.1}

Sequence

Transcript Sequence

>Glyur005223s00044641.1
AAGGCTTTGGTTATTTACTATCCACTAGCTGGAAGGTTGGGTTGGATTCATGAAGGAGACCGATGGGAACTCCACTGCAACGCCAAGGGAGCGCTGTTATTAGAAGCCACATGCGAAGAACCAGAGAGTTTAAATGATTTGGGAGATTTCGTGCCAACCAATTTGGTTTCACAACTGATACCAAAACGTCGACGTCGAATACGATGTCGTTCCCATCGAGGAAATGCCTCTGTTGGCGATTCCGTTGCGGAGGTTTCACCTTGGGAATTCGCCTTATGTCGAGCCGCGATTGACGGAACGGCAGCCATGCGTTTCGTCAGCACGTGGGCTAAGCTGGCGCGTGGGGAGGGGCGTTTGGACACAATAACGGAAATCCCGTGTCACGATCGAACCGCGCTAGACTCGCGCAAGGCGCAGCAGCACTACTCGCACCACCGCCATTGCGAGTTTCACGCGCCTCCTATTTGGTTGGGAGACACGGAGGCAGTTACAGAAGTGGTGGTTAGTACCATGAAACTCACGCTGGAACAAATCAAGAAGCTAAAAAACGCAGCTAATGCAAGAGTACGTTATTCGACTTTTGAGGTTGTTGCGGGGCATGTTTGGAGGTGCGTGACCAAAGCGCGCTATTATGGAAACGGTGAACAACAAACGAGGTTGTCCACGTTGGTTAACTGTAGAAACCGTTTGGAACCGCATCTTCCAAACGGTTACGCAGGGAACGCGGCGTTTCCTACCGTGACATCAACGTGCACCTTTGGTGAACTTATGCAAAAGCCTTTGGGTTATGCGGTTGAGAATGTTAGAAGAGCACTTGAGAGGGTGAATGGAGAGTTTGTTGGTTCGGCGCTTGGTTACGTTGATAGGGAGAAGGATATGGATTTGGTGAGGTATAATTTTCACTACCCCGCGAAAAGTGTGTTGGGTCGGGGAATGTATAAGGGGAACCCGAACCTCTTTGTTGTGTGGATGCGGATTTTGGGTGGGGCGAAACCGGTTTATTTTGGGCCGGGTTATATGGATTCTGAAGGGAAGGCTTTTGTTATGAATAATGTCAATGGCGATGGCGTTGTTGTGGCGATTTGTTTGGAGGCTTCTCATATGGATCGGTTTAGGAAATTGTTTTATGATGATATTACCGAAGAGGGGTTTCGTACTTCTTCCAAATTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05223	63	1268	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13065	E2.3.1.133, HCT	EC:2.3.1.133	Phenylpropanoid biosynthesis	map00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
			Flavonoid biosynthesis	map00941

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005223s00044641.1	PF02458.10	Transferase	1	63	1.40E-09
Glyur005223s00044641.1	PF02458.10	Transferase	95	377	1.10E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.046
SRR1783600	control	0.031
SRR1783602	moderate drought stress	0.244
SRR1811619	moderate drought stress	0.275

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.046
DRR006520	Root Summer glycyrrhizin high producing strain	0.090
DRR006521	Root Winter glycyrrhizin high producing strain	2.513
DRR006522	Root Winter glycyrrhizin high producing strain	2.084
DRR006523	Root Summer glycyrrhizin low producing strain	0.188
DRR006524	Root Summer glycyrrhizin low producing strain	0.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.119
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.625
SRR2868004	Drought Stress(Tissue:root)	2.119
SRR2967015	Control (Tissue:root)	1.324

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.042
SRR9715742	Root	0.473
SRR9715743	Root	0.183

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.170
SRR8749028	MeJA induced 9h	15.168
SRR8749029	MeJA induced 9h	29.247
SRR8749030	Uninduced	40.165
SRR8749031	Uninduced	64.387
SRR8749032	Uninduced	140.994

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.171
SRR8400027	Control-Root	0.103