Gene detail information of Glyur005232s00041149.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03300.31.00E-83dicer-like 2
NRKEH42074.12.56E-140endoribonuclease dicer-like protein [Medicago truncatula]
COGYP_003495423.19.00E-22ribonuclease III [Deferribacter desulfuricans SSM1]
Swissprottr|Q3EBC8|DCL2_ARATH5.00E-102Endoribonuclease Dicer homolog 2
trEMBLtr|A0A072VJ60|A0A072VJ60_MEDTR1.00E-140Endoribonuclease dicer-like protein {ECO:0000313|EMBL:KEH42074.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0523270668924-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11592DICER1, DCR1 EC:3.1.26.- MicroRNAs in cancer map05206


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005232s00041149.1PF00636.21Ribonuclease_3651761.50E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.737
SRR1783600control6.130
SRR1783602moderate drought stress7.215
SRR1811619moderate drought stress7.584

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.570
DRR006520Root Summer glycyrrhizin high producing strain22.978
DRR006521Root Winter glycyrrhizin high producing strain1.549
DRR006522Root Winter glycyrrhizin high producing strain1.388
DRR006523Root Summer glycyrrhizin low producing strain23.099
DRR006524Root Summer glycyrrhizin low producing strain22.819
DRR006525Leaf Summer glycyrrhizin high producing strain8.006
DRR006526Leaf Summer glycyrrhizin high producing strain8.183

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.771
SRR2868004Drought Stress(Tissue:root)8.552
SRR2967015Control (Tissue:root)8.812

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.331
SRR9715740Leave1.730
SRR9715741Leave2.127
SRR9715739Root2.801
SRR9715742Root11.585
SRR9715743Root10.014

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.394
SRR8749028MeJA induced 9h1.654
SRR8749029MeJA induced 9h1.761
SRR8749030Uninduced0.111
SRR8749031Uninduced0.000
SRR8749032Uninduced0.080

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.968
SRR8400027Control-Root15.920

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved