Gene detail information of Glyur005261s00041512.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08630.55.00E-88threonine aldolase 1
NRAFK43649.11.07E-121unknown [Lotus japonicus]
COGYP_005443407.13.00E-66putative threonine aldolase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q8RXU4|THA1_ARATH6.00E-109Probable low-specificity L-threonine aldolase 1
trEMBLtr|I3STQ7|I3STQ7_LOTJA4.00E-122Uncharacterized protein {ECO:0000313|EMBL:AFK43649.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold052611291215-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01620ltaE EC:4.1.2.48 Biosynthesis of amino acids map01230
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016829  lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005261s00041512.1PF01212.16Beta_elim_lyase81853.60E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.503
SRR1783600control0.551
SRR1783602moderate drought stress0.842
SRR1811619moderate drought stress0.835

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.254
DRR006520Root Summer glycyrrhizin high producing strain1.273
DRR006521Root Winter glycyrrhizin high producing strain3.665
DRR006522Root Winter glycyrrhizin high producing strain3.874
DRR006523Root Summer glycyrrhizin low producing strain1.565
DRR006524Root Summer glycyrrhizin low producing strain1.519
DRR006525Leaf Summer glycyrrhizin high producing strain3.385
DRR006526Leaf Summer glycyrrhizin high producing strain3.457

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.024
SRR2868004Drought Stress(Tissue:root)5.911
SRR2967015Control (Tissue:root)7.966

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.273
SRR9715740Leave4.784
SRR9715741Leave21.010
SRR9715739Root0.665
SRR9715742Root1.726
SRR9715743Root2.146

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.718
SRR8749028MeJA induced 9h8.346
SRR8749029MeJA induced 9h3.478
SRR8749030Uninduced11.488
SRR8749031Uninduced10.450
SRR8749032Uninduced4.965

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.559
SRR8400027Control-Root4.367

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved