Gene detail information of Glyur005308s00042031.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09770.14.00E-101RING/U-box superfamily protein
NRXP_007145222.10hypothetical protein PHAVU_007G220900g [Phaseolus vulgaris]
Swissprottr|Q9S752|LOFG2_ARATH6.00E-125Probable E3 ubiquitin-protein ligase LOG2
trEMBLtr|V7BKV9|V7BKV9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17216.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold05308334189+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005308s00042031.1PF13920.1zf-C3HC4_32853311.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.210
SRR1783600control11.207
SRR1783602moderate drought stress12.205
SRR1811619moderate drought stress11.857

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.838
DRR006520Root Summer glycyrrhizin high producing strain24.937
DRR006521Root Winter glycyrrhizin high producing strain24.629
DRR006522Root Winter glycyrrhizin high producing strain25.372
DRR006523Root Summer glycyrrhizin low producing strain25.463
DRR006524Root Summer glycyrrhizin low producing strain26.309
DRR006525Leaf Summer glycyrrhizin high producing strain8.421
DRR006526Leaf Summer glycyrrhizin high producing strain8.420

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.070
SRR2868004Drought Stress(Tissue:root)34.105
SRR2967015Control (Tissue:root)33.201

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.299
SRR9715740Leave11.130
SRR9715741Leave10.962
SRR9715739Root19.826
SRR9715742Root21.111
SRR9715743Root20.716

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.067
SRR8749028MeJA induced 9h21.716
SRR8749029MeJA induced 9h20.055
SRR8749030Uninduced19.494
SRR8749031Uninduced10.877
SRR8749032Uninduced19.948

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.953
SRR8400027Control-Root31.356

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved