Gene detail

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Gene detail information of Glyur005311s00043455.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35710.1	0	Protein kinase family protein with leucine-rich repeat domain
NR	XP_004492922.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cicer arietinum]
COG	YP_004775215.1	2.00E-58	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|G7KU89\|G7KU89_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES80539.1}

Sequence

Transcript Sequence

>Glyur005311s00043455.1
TGGTGGAGAATTCTCTTCATATTCCTTTGGATCCTTCTGCCACCCTCTTTGCTTCAAGTTGCTGGTTTTTCCAAAACCGTTTCTTTGAGTTTGACCCATGCTGCCACAATTACTACTGTTCATGATCAAGCTGCAGTGGAAGACAAGGAAGCAAATGCTCTGTTGAAGTGGAAACACAGCCTTGACAATCACAGCCAAGATCTCTTGTCAACTTGGACAGGAACTCAGTGTGACAAATCCAAGTCCGTCTCCAGCATAAACCTTGCAAATTATGGGCTACAAGGTACACTCCACACACTCAGCTTCTCCTCATTCCCCAACCTCTTCAGCATAGATATCTACAACAACCACTTTTATGGGACCATTACCCCACAAATTGCCAACTTGTCCAAAGTAAATTTTTTGAACTTCTCTTCAAATTCTTTTGATGGTTCCATCCCAAAAGAAATGTGGACATTGAGGAGTTTACGTGGCCTTGATCTTTCTATATGTCAACTAAGTGGAGAGATTCCTAGTTCCATGGGAAAATTGTCCAACCTAATATATCTGGATTTTGGTAAAAATAAACTTTCTGGCCACATTCCTCCAGAGGTTGGGAAATTGAGCAACTTGAGGGAAATCTCTATCCGGTACTATCCCACAATAGGTAACATGAGCAACTTAAATCAACTTTACCTTTCTAATAACACCCTGTTGTCTGGACCAATCCCTCCCTTCTTCTGGAACATGTCTAACTTGTCCTTGCTCTGGCTTGATAACAATAATTTTTCTGGACCAATCCCTGCTTCCATAGAAAACTTGGCCAATGTTAATGATCTCGCACTTGATCTCAACCACCTTTCTGGATCTATTCCTGTCACAATTGGGAACTTGACAAAGCTCGGGGCGTTGTACTTGCGCCATAATCATTTTTCTGGATCAATTCCTGCCTCCGTAGGAAATCTAATCAATTTGGAGACCCTCAGTCTCCAAGATAACAATCTCAGTGGATCTATTCCTGTCACAATTGGAAATTTGACAAGGCTCACTATCTTGGAATTATCCACTAACAAAATTAGTGGAAATCTAATCAATTTGAAGTTCGTTGGTCTCCATGAAAACAATCTCTCTGGACCTATTCCTCCCGCCATTGGGAACTTGACAAAGCTCAGGTGGTTGTTCTTGCGCTCCAATTATTTTTCTGGATCAATTCCTGCCTCCATAGGAAATCTAATCAATTTGGAGATCCTCAGTCTCCAAGAAAACAATCTCTCTGGACCTATTCCTGTCACAATTGGAAATTTGACAAGGCTCACATACCTCACATTGTCCACTAACAAACTTAGTGGTAGCAGTCCACAGGTCCTGAATAACATTACAACCTGGATTATATTGTCATTAGCCGACAATGATTTCATTGGCTATATACCTCCTCGAATATGCTCTGGCGGGTCACTACGATACTTCATAGCTGAGCACAACCATTTCCTTGGCCCCGTACCACCAAGCTTGAAAAACTGCTCTAGTATTGAAGTACTCATGCTTCAGGAAAATCAAATAGGAGATATAGCACAAGATTTTGGTGGGAAGTGTCCTAATCTTGCTAGCTTCAAGATATCCGACAACAATATTTCCGGCGGTATACCAGTGGAACTTGTTGCGGCAACCAAGCTAGGTGAGCTTCATCTTTCTTCGAATCACCTGACTGGGAAGCTTTCAAAGGAACTAGGAAACATGAAATCATTAATTGAAGTTAAGATTAGCAACAATCATCTTTCGGGAAACATTTCAACTGAAATTGGATCATTACAGAAGCTTGAAGAGCTGGATATGGGAGGAAACATGTTGAGTGGCACAATACCAAAACAAGTTGTGATGTTACCCACGTTACAAAACTTGAATTTGAGTAAAAACAAATTCGAGGGAAGCATTCCCTTGGAGTTGGGCCAATCACAACCTCTTGAATCTCTTGACCTTAGCTGGAATTTGTTGAGTGGAACAATACCAACAGTGCTTGGAGAGTCAAGGCAATTGCAATGGTTGAATCTATCATGCAATAATCTCTCAGGCACCATTCCATCCAGTTTTGATGACGTCAATGCCATGTCAAGCTTGATTTTGGTTGACATATCATACAACCAGCTACAAGGGAGGCTTCCAAATAATAAAGCCTTTCTTAACGCTTCAATTGAATCATTAAAGAATAACAAAGGCTTGTGTGGTGATCACACTGGCTTAGTGCTTTGCCCAAGACAGAAGAGCCACAACGTCATCCTACTAGTATTGTTTGTTATCTTAGGTGCTCTACTACTAGTCTTTTGTGGGGTGGGAGTTTCAATGTATATTCTTTGCCGGAGAGCAAGAAAGAAAGAAATTGAGGATAAAGATTCCAAAGAAGGACAATCAGAAGAAGTCTTTTCCATATGGAGTCACGATGGAAAAATGGTGTTTGAAAATATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATAGGAGTGGGAGGGGAAGGATCTGTTTACAGGGCCAAGTTAGCTTCAGGTCTGGTTGTTGCTGTGAAGAAACTTCATTTGGAAACAGATGGAGAGAGGCCCACTTTCAAAGCTTTTGAAAATGAAATTCAGGCTTTGACAGAAATCAAGCATCGTAACATTTTAAAGCTCTACGGATTTTGCTCACACTCGCGATTCTCATTTCTTGTTTACAAGTTCTTGGAAGGGGGAAAATTGGCTCAAATGCTAAACAATGACACAACAGCAATTGAGTTTGATTGGGAAAAAAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTATATGCATCATGACTGCTTACCTCCAATAGTTCATCGCGACATATCAAGCAAGAATGTTCTTTTGGATTTAGAATATGAAGCTCATCTTTCTGATTTTGGAACAGCCAATTTTCTCAAGCCTGATTCACACACTTGGACCGCATTTGNAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACCATGCAAGTGAACGAGAAATGTGATGTTTTCAGCTTTGGAGTACTTTGTTTTGAAATCCTAATGGGAAAGCATCCAGGAGATCTCATTTCTTCGTTGTTGTCACCATCTACCGCAAAGATGACTTATAACTTGCTGTTGATTGATGTGTTAGACCAACGCACTCCTCCATCCAACTATTCAATTGCTGGGGATGTCATCTTGATTGCAAAGTTGGCATTTTCTTGCTTGAGTGAAAATCCCATGGAGCAAATATCTAAAGAACTTTTCATGAGAAAATCACCTTTAGCAGACCAGTTCCCTGTCCTCAAACTTGGACAGCTCCACTAGCACATCGAACTACTTAAGTATTTTGTTTTCTTTGCACGTCATCTATCATATTATGTTAAGCTTTTT

Protein Sequence

>Glyur005311s00043455.1
WWRILFIFLWILLPPSLLQVAGFSKTVSLSLTHAATITTVHDQAAVEDKEANALLKWKHSLDNHSQDLLSTWTGTQCDKSKSVSSINLANYGLQGTLHTLSFSSFPNLFSIDIYNNHFYGTITPQIANLSKVNFLNFSSNSFDGSIPKEMWTLRSLRGLDLSICQLSGEIPSSMGKLSNLIYLDFGKNKLSGHIPPEVGKLSNLREISIRYYPTIGNMSNLNQLYLSNNTLLSGPIPPFFWNMSNLSLLWLDNNNFSGPIPASIENLANVNDLALDLNHLSGSIPVTIGNLTKLGALYLRHNHFSGSIPASVGNLINLETLSLQDNNLSGSIPVTIGNLTRLTILELSTNKISGNLINLKFVGLHENNLSGPIPPAIGNLTKLRWLFLRSNYFSGSIPASIGNLINLEILSLQENNLSGPIPVTIGNLTRLTYLTLSTNKLSGSSPQVLNNITTWIILSLADNDFIGYIPPRICSGGSLRYFIAEHNHFLGPVPPSLKNCSSIEVLMLQENQIGDIAQDFGGKCPNLASFKISDNNISGGIPVELVAATKLGELHLSSNHLTGKLSKELGNMKSLIEVKISNNHLSGNISTEIGSLQKLEELDMGGNMLSGTIPKQVVMLPTLQNLNLSKNKFEGSIPLELGQSQPLESLDLSWNLLSGTIPTVLGESRQLQWLNLSCNNLSGTIPSSFDDVNAMSSLILVDISYNQLQGRLPNNKAFLNASIESLKNNKGLCGDHTGLVLCPRQKSHNVILLVLFVILGALLLVFCGVGVSMYILCRRARKKEIEDKDSKEGQSEEVFSIWSHDGKMVFENIIEATNNFDDKYLIGVGGEGSVYRAKLASGLVVAVKKLHLETDGERPTFKAFENEIQALTEIKHRNILKLYGFCSHSRFSFLVYKFLEGGKLAQMLNNDTTAIEFDWEKRVNVVKGVANALSYMHHDCLPPIVHRDISSKNVLLDLEYEAHLSDFGTANFLKPDSHTWTAFXGTFGYAAPELAQTMQVNEKCDVFSFGVLCFEILMGKHPGDLISSLLSPSTAKMTYNLLLIDVLDQRTPPSNYSIAGDVILIAKLAFSCLSENPMEQISKELFMRKSPLADQFPVLKLGQLH

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05311	5553	9436	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005311s00043455.1	PF12799.2	LRR_4	317	353	2.00E-06
Glyur005311s00043455.1	PF13855.1	LRR_8	382	441	1.30E-06
Glyur005311s00043455.1	PF13516.1	LRR_6	500	516	1
Glyur005311s00043455.1	PF13516.1	LRR_6	620	637	1.5
Glyur005311s00043455.1	PF00560.28	LRR_1	670	690	0.018
Glyur005311s00043455.1	PF00069.20	Pkinase	825	1024	3.20E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.518
SRR1783600	control	3.357
SRR1783602	moderate drought stress	3.393
SRR1811619	moderate drought stress	3.199

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.107
DRR006520	Root Summer glycyrrhizin high producing strain	0.983
DRR006521	Root Winter glycyrrhizin high producing strain	0.358
DRR006522	Root Winter glycyrrhizin high producing strain	0.331
DRR006523	Root Summer glycyrrhizin low producing strain	0.745
DRR006524	Root Summer glycyrrhizin low producing strain	0.654
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.355
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.895
SRR2868004	Drought Stress(Tissue:root)	2.327
SRR2967015	Control (Tissue:root)	2.455

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.694
SRR9715740	Leave	0.850
SRR9715741	Leave	0.744
SRR9715739	Root	0.547
SRR9715742	Root	2.367
SRR9715743	Root	2.500

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.075
SRR8400027	Control-Root	2.522