Gene detail information of Glyur005416s00041472.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05980.23.00E-176DHFS-FPGS homolog B
NRXP_003616513.10Folylpolyglutamate synthase [Medicago truncatula]
COGYP_007298356.11.00E-52folylpolyglutamate synthase/dihydrofolate synthase [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprottr|F4K2A1|FPGS1_ARATH0Folylpolyglutamate synthase {ECO:0000250|UniProtKB:Q05932, ECO:0000312|EMBL:CAC80839.2}
trEMBLtr|G7K218|G7K218_MEDTR0Folylpolyglutamate synthase {ECO:0000256|PIRNR:PIRNR038895}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0541626139175-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01930FPGS EC:6.3.2.17 Folate biosynthesis map00790
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009396  folic acid-containing compound biosynthetic process


molecular_function

GO:0004326  tetrahydrofolylpolyglutamate synthase activity

GO:0005524  ATP binding

GO:0016874  ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005416s00041472.1PF08245.7Mur_ligase_M1042632.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.550
SRR1783600control2.531
SRR1783602moderate drought stress3.586
SRR1811619moderate drought stress3.618

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.328
DRR006520Root Summer glycyrrhizin high producing strain5.379
DRR006521Root Winter glycyrrhizin high producing strain1.137
DRR006522Root Winter glycyrrhizin high producing strain1.090
DRR006523Root Summer glycyrrhizin low producing strain5.168
DRR006524Root Summer glycyrrhizin low producing strain4.686
DRR006525Leaf Summer glycyrrhizin high producing strain25.598
DRR006526Leaf Summer glycyrrhizin high producing strain26.384

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.485
SRR2868004Drought Stress(Tissue:root)7.451
SRR2967015Control (Tissue:root)6.112

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.277
SRR9715740Leave38.115
SRR9715741Leave27.423
SRR9715739Root0.803
SRR9715742Root3.684
SRR9715743Root4.094

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.204
SRR8749028MeJA induced 9h2.797
SRR8749029MeJA induced 9h2.082
SRR8749030Uninduced3.411
SRR8749031Uninduced1.444
SRR8749032Uninduced1.351

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.986
SRR8400027Control-Root9.821

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved