Gene detail information of Glyur005454s00042422.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.13.00E-83chitinase A
NRKHN28254.10G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Glycine soja]
Swissprottr|P23472|CHLY_HEVBR8.00E-108Lysozyme (Precursor)
trEMBLtr|K7N178|K7N178_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G04645.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0545418285299-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005454s00042422.1PF00704.23Glyco_hydro_18342571.60E-19
Glyur005454s00042422.1PF08276.6PAN_23383861.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.717
SRR1783600control1.518
SRR1783602moderate drought stress0.488
SRR1811619moderate drought stress0.438

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.612
DRR006520Root Summer glycyrrhizin high producing strain3.138
DRR006521Root Winter glycyrrhizin high producing strain1.988
DRR006522Root Winter glycyrrhizin high producing strain2.015
DRR006523Root Summer glycyrrhizin low producing strain2.098
DRR006524Root Summer glycyrrhizin low producing strain1.972
DRR006525Leaf Summer glycyrrhizin high producing strain3.945
DRR006526Leaf Summer glycyrrhizin high producing strain4.330

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.466
SRR2868004Drought Stress(Tissue:root)3.281
SRR2967015Control (Tissue:root)3.042

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.019
SRR9715740Leave2.415
SRR9715741Leave7.949
SRR9715739Root0.215
SRR9715742Root4.023
SRR9715743Root3.280

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.113
SRR8749028MeJA induced 9h10.955
SRR8749029MeJA induced 9h5.212
SRR8749030Uninduced13.900
SRR8749031Uninduced6.101
SRR8749032Uninduced6.366

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.870
SRR8400027Control-Root2.394

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved