Gene detail information of Glyur005455s00047879.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40470.1 | 9.00E-67 | RNI-like superfamily protein |
| NR | KEH22153.1 | 0 | F-box/LRR protein [Medicago truncatula] |
| COG | YP_008954.1 | 3.00E-07 | hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9C5D2|FBL4_ARATH | 9.00E-18 | F-box/LRR-repeat protein 4 |
| trEMBL | tr|A0A072TZ55|A0A072TZ55_MEDTR | 0 | F-box/LRR protein {ECO:0000313|EMBL:KEH22153.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05455 | 3289 | 4620 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005455s00047879.1 | PF00646.28 | F-box | 7 | 42 | 3.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.794 |
| SRR1783600 | control | 3.050 |
| SRR1783602 | moderate drought stress | 12.746 |
| SRR1811619 | moderate drought stress | 11.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.912 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.217 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.353 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.866 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.869 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.368 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.495 |
| SRR2967015 | Control (Tissue:root) | 18.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.965 |
| SRR9715740 | Leave | 8.834 |
| SRR9715741 | Leave | 7.253 |
| SRR9715739 | Root | 13.079 |
| SRR9715742 | Root | 14.043 |
| SRR9715743 | Root | 12.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.187 |
| SRR8749028 | MeJA induced 9h | 11.144 |
| SRR8749029 | MeJA induced 9h | 3.274 |
| SRR8749030 | Uninduced | 1.727 |
| SRR8749031 | Uninduced | 1.813 |
| SRR8749032 | Uninduced | 1.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.578 |
| SRR8400027 | Control-Root | 11.423 |